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Aliases for GC07M066550 Gene

Subcategory (RNA class) for GC07M066550 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC07M066550 Gene

No Aliases found

ORGUL Members for GC07M066550 Gene

No data available for External Ids for GC07M066550 Gene

Summaries for GC07M066550 Gene

GeneCards Summary for GC07M066550 Gene

GC07M066550 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC07M066550 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC07M066550 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M066550 Gene

Genomics for GC07M066550 Gene

Regulatory Elements for GC07M066550 Gene

Enhancers for GC07M066550 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H066535 1 ENCODE 0.4 +14.4 14439 2 FOXA2 ATF1 MLX DMAP1 YY1 TCF12 REST MIER2 PPARG KAT8 LOC100996437 GS1-124K5.4 CRCP RABGEF1 GC07M066550 PIR35492
GH07H066540 0.9 ENCODE 0.4 +10.3 10328 0 PKNOX1 ATF1 ARNT TCF12 GATA2 ATF7 NCOA1 MEF2D MBD2 SMARCA4 LOC100996437 VKORC1L1 PIR35492 GC07M066550
GH07H066539 0.5 ENCODE 0.4 +11.5 11526 0 ZFHX2 PTBP1 ZMYM3 ZBTB33 EGR2 LOC100996437 PIR35492 GC07M066550
GH07H066551 0.2 ENCODE 0.7 -1.7 -1690 2 LOC100996437 VKORC1L1 RABGEF1 GC07M066550 ENSG00000275400
GH07H066553 0.2 ENCODE 0.7 -3.2 -3155 0 GC07M066550 ENSG00000275400
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M066550 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M066550 Gene

Chromosome:
7
Start:
66,550,569 bp from pter
End:
66,550,694 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for GC07M066550 Gene

Genes around GC07M066550 on UCSC Golden Path with GeneCards custom track

GC07M066550 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M066550 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M066550 Gene

Proteins for GC07M066550 Gene

Post-translational modifications for GC07M066550 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M066550 Gene

Domains & Families for GC07M066550 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M066550 Gene

Function for GC07M066550 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M066550 Gene

Localization for GC07M066550 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M066550 Gene

Pathways & Interactions for GC07M066550 Gene

SuperPathways for GC07M066550 Gene

No Data Available

Interacting Proteins for GC07M066550 Gene

Gene Ontology (GO) - Biological Process for GC07M066550 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M066550 Gene

Drugs & Compounds for GC07M066550 Gene

No Compound Related Data Available

Transcripts for GC07M066550 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M066550 Gene

No ASD Table

Relevant External Links for GC07M066550 Gene

GeneLoc Exon Structure for
GC07M066550

No data available for mRNA/cDNA for GC07M066550 Gene

Expression for GC07M066550 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M066550 Gene

Orthologs for GC07M066550 Gene

No data available for Orthologs and Evolution for GC07M066550 Gene

Paralogs for GC07M066550 Gene

No data available for Paralogs for GC07M066550 Gene

Variants for GC07M066550 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M066550 Gene

Disorders for GC07M066550 Gene

No disorders were found for GC07M066550 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M066550 Gene

Publications for GC07M066550 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC07M066550 Gene

Sources for GC07M066550 Gene

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