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Aliases for GC07M045104 Gene

Subcategory (RNA class) for GC07M045104 Gene

snoRNA

Quality Score for this RNA gene is

9

Aliases for GC07M045104 Gene

No Aliases found

ORGUL Members for GC07M045104 Gene

No data available for External Ids for GC07M045104 Gene

Summaries for GC07M045104 Gene

GeneCards Summary for GC07M045104 Gene

GC07M045104 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07M045104 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC07M045104

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M045104 Gene

Genomics for GC07M045104 Gene

Regulatory Elements for GC07M045104 Gene

Enhancers for GC07M045104 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G045087 1.5 FANTOM5 ENCODE dbSUPER 0.4 +15.5 15520 2.4 HDAC1 PKNOX1 ATF1 ZNF76 KLF17 BMI1 ZBTB40 GLIS2 EGR1 SCRT2 NACAD TBRG4 ADCY1 GC07M045104 GC07M045132 GC07M045136 PIR44785 SNORA5A
GH07G045092 0.9 ENCODE dbSUPER 0.4 +11.6 11621 1.0 TBP ESRRA KLF1 ZNF10 ZNF843 OSR2 ZFHX2 GLIS1 ZNF600 FOS SNHG15 ENSG00000228596 NACAD SNORA5A PIR44785 GC07M045136 GC07M045132 GC07M045104
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M045104 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M045104 Gene

Chromosome:
7
Start:
45,104,348 bp from pter
End:
45,104,482 bp from pter
Size:
135 bases
Orientation:
Minus strand

Genomic View for GC07M045104 Gene

Genes around GC07M045104 on UCSC Golden Path with GeneCards custom track

GC07M045104 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M045104 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07M045104 Gene

ORGUL Member Location for GC07M045104 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M045104 Gene

Proteins for GC07M045104 Gene

Post-translational modifications for GC07M045104 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M045104 Gene

Domains & Families for GC07M045104 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M045104 Gene

Function for GC07M045104 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M045104 Gene

Localization for GC07M045104 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07M045104 Gene

Pathways & Interactions for GC07M045104 Gene

SuperPathways for GC07M045104 Gene

No Data Available

Interacting Proteins for GC07M045104 Gene

Gene Ontology (GO) - Biological Process for GC07M045104 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M045104 Gene

Drugs & Compounds for GC07M045104 Gene

No Compound Related Data Available

Transcripts for GC07M045104 Gene

fRNAdb Secondary structures for GC07M045104 Gene

  • FR203355

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M045104 Gene

No ASD Table

Relevant External Links for GC07M045104 Gene

GeneLoc Exon Structure for
GC07M045104

No data available for mRNA/cDNA for GC07M045104 Gene

Expression for GC07M045104 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M045104 Gene

Orthologs for GC07M045104 Gene

No data available for Orthologs and Evolution for GC07M045104 Gene

Paralogs for GC07M045104 Gene

No data available for Paralogs for GC07M045104 Gene

Variants for GC07M045104 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M045104 Gene

Disorders for GC07M045104 Gene

No disorders were found for GC07M045104 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M045104 Gene

Publications for GC07M045104 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) . … Gojobori T. (Nucleic Acids Res. 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T. … Sugano S. (PLoS Biol. 2004) 1

Products for GC07M045104 Gene

Sources for GC07M045104 Gene

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