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Aliases for GC07M034297 Gene

Subcategory (RNA class) for GC07M034297 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07M034297 Gene

No Aliases found

ORGUL Members for GC07M034297 Gene

No data available for External Ids for GC07M034297 Gene

Summaries for GC07M034297 Gene

GeneCards Summary for GC07M034297 Gene

GC07M034297 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07M034297 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M034297 Gene

Genomics for GC07M034297 Gene

Regulatory Elements for GC07M034297 Gene

Enhancers for GC07M034297 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G034320 1 Ensembl ENCODE 0.3 -23.8 -23791 0.8 ELF3 CTCF RAD21 TEAD3 E2F1 GATA3 ZNF143 SMC3 FOS CREM RNU6-438P GC07M034297 GC07M034599
GH07G034338 0.8 ENCODE 0.3 -41.7 -41689 1.5 ELF3 FOXA2 MLX RAD21 RARA CREM PPARG MIER3 CEBPA ETV4 RNU6-438P GC07M034297 GC07M034599
GH07G034341 0.7 ENCODE 0.3 -44.5 -44540 1.7 SOX13 CBX3 FOXA2 ZNF644 ZBTB7B GATA3 ZNF316 FOSL2 FOS MAFK RNU6-438P GC07M034297 GC07M034599
GH07G034314 0.5 ENCODE 0.4 -17.6 -17622 0.8 PRDM6 JUND FOS GC07M034297 RNU6-438P GC07M034599
GH07G034277 0.6 FANTOM5 0.3 +20.4 20381 0.2 JUND GATA2 JUN FOS RNU6-438P BMPER GC07M034297 ENSG00000236212
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M034297 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M034297 Gene

Chromosome:
7
Start:
34,297,495 bp from pter
End:
34,297,598 bp from pter
Size:
104 bases
Orientation:
Minus strand

Genomic View for GC07M034297 Gene

Genes around GC07M034297 on UCSC Golden Path with GeneCards custom track

GC07M034297 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M034297 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M034297 Gene

Proteins for GC07M034297 Gene

Post-translational modifications for GC07M034297 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M034297 Gene

Domains & Families for GC07M034297 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M034297 Gene

Function for GC07M034297 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M034297 Gene

Localization for GC07M034297 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07M034297 Gene

Pathways & Interactions for GC07M034297 Gene

SuperPathways for GC07M034297 Gene

No Data Available

Interacting Proteins for GC07M034297 Gene

Gene Ontology (GO) - Biological Process for GC07M034297 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M034297 Gene

Drugs & Compounds for GC07M034297 Gene

No Compound Related Data Available

Transcripts for GC07M034297 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M034297 Gene

No ASD Table

Relevant External Links for GC07M034297 Gene

GeneLoc Exon Structure for
GC07M034297

No data available for mRNA/cDNA for GC07M034297 Gene

Expression for GC07M034297 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M034297 Gene

Orthologs for GC07M034297 Gene

No data available for Orthologs and Evolution for GC07M034297 Gene

Paralogs for GC07M034297 Gene

No data available for Paralogs for GC07M034297 Gene

Variants for GC07M034297 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M034297 Gene

Disorders for GC07M034297 Gene

No disorders were found for GC07M034297 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M034297 Gene

Publications for GC07M034297 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC07M034297 Gene

Sources for GC07M034297 Gene

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