Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC06P168880 Gene

Subcategory (RNA class) for GC06P168880 Gene

undefined

Quality Score for this RNA gene is

0.2

Aliases for GC06P168880 Gene

No Aliases found

ORGUL Members for GC06P168880 Gene

No data available for External Ids for GC06P168880 Gene

Summaries for GC06P168880 Gene

GeneCards Summary for GC06P168880 Gene

GC06P168880 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P168880 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC06P168880

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P168880 Gene

Genomics for GC06P168880 Gene

Regulatory Elements for GC06P168880 Gene

Enhancers for GC06P168880 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G168883 1.2 Ensembl ENCODE 0.7 +3.4 3420 2.4 FOXA2 CBX3 RB1 ARNT ZSCAN4 PLRG1 ZBTB40 ZNF2 ZNF48 ZSCAN9 LINC02519 GC06P168880 GC06P168941
GH06G168894 1.2 Ensembl ENCODE 0.4 +14.6 14600 1.6 ELF3 ATF1 FOXA2 CBX3 ZSCAN4 ARID4B ZBTB40 ZNF2 RAD21 RARA GC06P168880 GC06P168941
GH06G168878 0.4 FANTOM5 0.7 -2.7 -2678 0.4 SMARCA4 GC06P168880 LOC105378144
GH06G168909 0.8 FANTOM5 ENCODE 0.3 +28.1 28091 0.3 CTCF CREB1 FRMD1 THBS2 GC06P168880 GC06P168941
GH06G168913 0.6 ENCODE 0.3 +32.8 32768 1.1 ZNF687 HLF MNT ZEB2 ZEB1 RAD51 ZFHX2 CTBP1 HES1 EGR2 FRMD1 ENSG00000232640 GC06P168941 GC06P168880
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P168880 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P168880 Gene

Chromosome:
6
Start:
168,880,914 bp from pter
End:
168,880,931 bp from pter
Size:
18 bases
Orientation:
Plus strand

Genomic View for GC06P168880 Gene

Genes around GC06P168880 on UCSC Golden Path with GeneCards custom track

GC06P168880 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P168880 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P168880 Gene

ORGUL Member Location for GC06P168880 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P168880 Gene

Proteins for GC06P168880 Gene

Post-translational modifications for GC06P168880 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P168880 Gene

Domains & Families for GC06P168880 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P168880 Gene

Function for GC06P168880 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P168880 Gene

Localization for GC06P168880 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P168880 Gene

Pathways & Interactions for GC06P168880 Gene

SuperPathways for GC06P168880 Gene

No Data Available

Interacting Proteins for GC06P168880 Gene

Gene Ontology (GO) - Biological Process for GC06P168880 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P168880 Gene

Drugs & Compounds for GC06P168880 Gene

No Compound Related Data Available

Transcripts for GC06P168880 Gene

fRNAdb Secondary structures for GC06P168880 Gene

  • FR174921

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P168880 Gene

No ASD Table

Relevant External Links for GC06P168880 Gene

GeneLoc Exon Structure for
GC06P168880

No data available for mRNA/cDNA for GC06P168880 Gene

Expression for GC06P168880 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P168880 Gene

Orthologs for GC06P168880 Gene

No data available for Orthologs and Evolution for GC06P168880 Gene

Paralogs for GC06P168880 Gene

No data available for Paralogs for GC06P168880 Gene

Variants for GC06P168880 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P168880 Gene

Disorders for GC06P168880 Gene

No disorders were found for GC06P168880 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P168880 Gene

Publications for GC06P168880 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for GC06P168880 Gene

Sources for GC06P168880 Gene

Content
Loading form....