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Aliases for GC06P148279 Gene

Subcategory (RNA class) for GC06P148279 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC06P148279 Gene

No Aliases found

ORGUL Members for GC06P148279 Gene

No data available for External Ids for GC06P148279 Gene

Summaries for GC06P148279 Gene

GeneCards Summary for GC06P148279 Gene

GC06P148279 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC06P148279 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC06P148279 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P148279 Gene

Genomics for GC06P148279 Gene

Regulatory Elements for GC06P148279 Gene

Enhancers for GC06P148279 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H148266 1.1 FANTOM5 Ensembl ENCODE 0.4 -10.5 -10508 2 JUND JUN FOS UST GC06P148279 SASH1
GH06H148271 0.8 Ensembl ENCODE 0.4 -6.5 -6470 2 JUND POLR2A JUN FOS GC06P148279 SASH1
GH06H148243 1 FANTOM5 Ensembl ENCODE 0.3 -33.9 -33936 2 ZSCAN4 MNT RNU6-1222P SASH1 GC06P148279
GH06H148202 1.3 FANTOM5 Ensembl ENCODE 0.2 -74.8 -74804 1 ATF1 TBL1XR1 MAX BMI1 EBF1 RELA POLR2A EED ATF7 ETV6 SASH1 GC06P148279
GH06H148238 0.7 Ensembl ENCODE 0.3 -38.2 -38234 3 ATF7 KLF4 ATF2 RNU6-1222P SASH1 UST-AS1 GC06P148279
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P148279 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P148279 Gene

Chromosome:
6
Start:
148,278,671 bp from pter
End:
148,278,778 bp from pter
Size:
108 bases
Orientation:
Plus strand

Genomic View for GC06P148279 Gene

Genes around GC06P148279 on UCSC Golden Path with GeneCards custom track

GC06P148279 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P148279 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P148279 Gene

Proteins for GC06P148279 Gene

Post-translational modifications for GC06P148279 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P148279 Gene

Domains & Families for GC06P148279 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P148279 Gene

Function for GC06P148279 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P148279 Gene

Localization for GC06P148279 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P148279 Gene

Pathways & Interactions for GC06P148279 Gene

SuperPathways for GC06P148279 Gene

No Data Available

Interacting Proteins for GC06P148279 Gene

Gene Ontology (GO) - Biological Process for GC06P148279 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P148279 Gene

Drugs & Compounds for GC06P148279 Gene

No Compound Related Data Available

Transcripts for GC06P148279 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P148279 Gene

No ASD Table

Relevant External Links for GC06P148279 Gene

GeneLoc Exon Structure for
GC06P148279

No data available for mRNA/cDNA for GC06P148279 Gene

Expression for GC06P148279 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P148279 Gene

Orthologs for GC06P148279 Gene

No data available for Orthologs and Evolution for GC06P148279 Gene

Paralogs for GC06P148279 Gene

No data available for Paralogs for GC06P148279 Gene

Variants for GC06P148279 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P148279 Gene

Disorders for GC06P148279 Gene

No disorders were found for GC06P148279 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P148279 Gene

Publications for GC06P148279 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC06P148279 Gene

Sources for GC06P148279 Gene

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