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Aliases for GC06P135267 Gene

Subcategory (RNA class) for GC06P135267 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC06P135267 Gene

No Aliases found

ORGUL Members for GC06P135267 Gene

No data available for External Ids for GC06P135267 Gene

Summaries for GC06P135267 Gene

GeneCards Summary for GC06P135267 Gene

GC06P135267 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P135267 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC06P135267

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P135267 Gene

Genomics for GC06P135267 Gene

Regulatory Elements for GC06P135267 Gene

Enhancers for GC06P135267 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G135265 1.3 Ensembl ENCODE dbSUPER 0.7 +2.2 2199 6.8 CTCF TEAD4 BMI1 CEBPG RBBP5 CHD7 POLR2A EED FOS NR2F6 AHI1 ENSG00000234084 MIR548A2 MYB-AS1 MYB GC06P135267
GH06G135280 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.6 14570 2.4 BRD4 PKNOX1 RFX1 RNF2 ETV1 CEBPB ZNF507 POLR2H NFIC ZNF589 AHI1 ENSG00000224374 MYB GC06P135267 ENSG00000234084
GH06G135262 1.1 ENCODE dbSUPER 0.7 -4.6 -4620 0.9 HDAC1 TCF12 GATA2 FOS USF2 ZEB2 ZNF592 MEF2D TFDP1 ZNF589 AHI1 ENSG00000224374 GC06P135267
GH06G135286 1 Ensembl dbSUPER 0.3 +20.1 20133 1.0 BCOR HDGF NFRKB ZMYM3 MAX CHAMP1 FOSL1 ZNF766 FOXK2 GATA2 MYB-AS1 MYB ENSG00000234084 GC06P135267
GH06G135291 0.9 dbSUPER 0.3 +24.5 24503 0.9 HDAC1 PKNOX1 ATF1 TBL1XR1 ARNT CHAMP1 GATA2 RCOR1 FOS ZBTB2 ENSG00000234084 GC06P135267
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P135267 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P135267 Gene

Chromosome:
6
Start:
135,267,168 bp from pter
End:
135,267,286 bp from pter
Size:
119 bases
Orientation:
Plus strand

Genomic View for GC06P135267 Gene

Genes around GC06P135267 on UCSC Golden Path with GeneCards custom track

GC06P135267 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P135267 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P135267 Gene

ORGUL Member Location for GC06P135267 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P135267 Gene

Proteins for GC06P135267 Gene

Post-translational modifications for GC06P135267 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P135267 Gene

Domains & Families for GC06P135267 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P135267 Gene

Function for GC06P135267 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P135267 Gene

Localization for GC06P135267 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P135267 Gene

Pathways & Interactions for GC06P135267 Gene

SuperPathways for GC06P135267 Gene

No Data Available

Interacting Proteins for GC06P135267 Gene

Gene Ontology (GO) - Biological Process for GC06P135267 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P135267 Gene

Drugs & Compounds for GC06P135267 Gene

No Compound Related Data Available

Transcripts for GC06P135267 Gene

fRNAdb Secondary structures for GC06P135267 Gene

  • FR394680
  • FR306316

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P135267 Gene

No ASD Table

Relevant External Links for GC06P135267 Gene

GeneLoc Exon Structure for
GC06P135267

No data available for mRNA/cDNA for GC06P135267 Gene

Expression for GC06P135267 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P135267 Gene

Orthologs for GC06P135267 Gene

No data available for Orthologs and Evolution for GC06P135267 Gene

Paralogs for GC06P135267 Gene

No data available for Paralogs for GC06P135267 Gene

Variants for GC06P135267 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P135267 Gene

Disorders for GC06P135267 Gene

No disorders were found for GC06P135267 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P135267 Gene

Publications for GC06P135267 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC06P135267 Gene

Sources for GC06P135267 Gene

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