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Aliases for GC06P134260 Gene

Subcategory (RNA class) for GC06P134260 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC06P134260 Gene

No Aliases found

ORGUL Members for GC06P134260 Gene

No data available for External Ids for GC06P134260 Gene

Summaries for GC06P134260 Gene

GeneCards Summary for GC06P134260 Gene

GC06P134260 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC06P134260 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P134260 Gene

Genomics for GC06P134260 Gene

Regulatory Elements for GC06P134260 Gene

Enhancers for GC06P134260 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G134253 1.2 Ensembl ENCODE dbSUPER 0.7 -2.9 -2882 0.7 PKNOX1 L3MBTL2 HINFP MAFG ZNF384 ZNF592 ZNF316 PBX2 NFE2 EMSY SGK1 GC06P134260 RPS29P32
GH06G134249 1.5 Ensembl ENCODE dbSUPER 0.4 -7.0 -7010 2.0 PKNOX1 FOXA2 ATF1 MLX ARID4B SP5 JUNB PPARG KAT8 MIER3 SGK1 GC06P134260 RPS29P32
GH06G134245 1.4 Ensembl ENCODE dbSUPER 0.4 -10.0 -10025 3.8 ELF3 TBP PKNOX1 TBL1XR1 WRNIP1 BMI1 CBX5 RCOR1 RELB ETV6 SGK1 GC06P134260 RPS29P32
GH06G134234 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -21.5 -21534 3.0 ELF3 HDGF ATF1 BMI1 CBX5 SCRT2 FOS RELB ETV6 IKZF2 SGK1 RPS29P32 GC06P134260
GH06G134239 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.4 -16436 2.0 PKNOX1 NFIC NFIB TRIM28 SGK1 GC06P134260 RPS29P32
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P134260 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P134260 Gene

Chromosome:
6
Start:
134,257,034 bp from pter
End:
134,257,143 bp from pter
Size:
110 bases
Orientation:
Plus strand

Genomic View for GC06P134260 Gene

Genes around GC06P134260 on UCSC Golden Path with GeneCards custom track

GC06P134260 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P134260 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P134260 Gene

Proteins for GC06P134260 Gene

Post-translational modifications for GC06P134260 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P134260 Gene

Domains & Families for GC06P134260 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P134260 Gene

Function for GC06P134260 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P134260 Gene

Localization for GC06P134260 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P134260 Gene

Pathways & Interactions for GC06P134260 Gene

SuperPathways for GC06P134260 Gene

No Data Available

Interacting Proteins for GC06P134260 Gene

Gene Ontology (GO) - Biological Process for GC06P134260 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P134260 Gene

Drugs & Compounds for GC06P134260 Gene

No Compound Related Data Available

Transcripts for GC06P134260 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P134260 Gene

No ASD Table

Relevant External Links for GC06P134260 Gene

GeneLoc Exon Structure for
GC06P134260

No data available for mRNA/cDNA for GC06P134260 Gene

Expression for GC06P134260 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P134260 Gene

Orthologs for GC06P134260 Gene

No data available for Orthologs and Evolution for GC06P134260 Gene

Paralogs for GC06P134260 Gene

No data available for Paralogs for GC06P134260 Gene

Variants for GC06P134260 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P134260 Gene

Disorders for GC06P134260 Gene

No disorders were found for GC06P134260 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P134260 Gene

Publications for GC06P134260 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for GC06P134260 Gene

Sources for GC06P134260 Gene

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