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Aliases for GC06P121443 Gene

Subcategory (RNA class) for GC06P121443 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC06P121443 Gene

No Aliases found

ORGUL Members for GC06P121443 Gene

No data available for External Ids for GC06P121443 Gene

Summaries for GC06P121443 Gene

GeneCards Summary for GC06P121443 Gene

GC06P121443 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC06P121443 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P121443 Gene

Genomics for GC06P121443 Gene

Regulatory Elements for GC06P121443 Gene

Enhancers for GC06P121443 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G121434 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.1 -6089 6.3 ZNF76 SIN3A FEZF1 ZNF2 RAD21 YY1 ZNF121 GLIS2 GATA2 ZNF366 GJA1 RNU2-8P TBC1D32 GC06P121435 GC06P121443
GH06G121444 0.8 Ensembl dbSUPER 0.7 +0.8 785 0.4 POLR2A EP300 MAFK EGR2 GC06P121443 GC06M121454 RNU4-35P
GH06G121442 0.7 Ensembl dbSUPER 0.7 -0.9 -916 0.6 POLR2A CHD1 GC06P121443 GC06P121435
GH06G121443 0.7 Ensembl dbSUPER 0.7 -1.8 -1816 0.4 GATA2 POLR2A SCRT2 RNU2-8P GC06P121443 GC06P121435
GH06G121441 0.5 Ensembl dbSUPER 0.7 -2.3 -2316 0.2 RNU2-8P GC06P121443 GC06P121435
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P121443 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P121443 Gene

Chromosome:
6
Start:
121,443,616 bp from pter
End:
121,443,829 bp from pter
Size:
214 bases
Orientation:
Plus strand

Genomic View for GC06P121443 Gene

Genes around GC06P121443 on UCSC Golden Path with GeneCards custom track

GC06P121443 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P121443 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P121443 Gene

Proteins for GC06P121443 Gene

Post-translational modifications for GC06P121443 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P121443 Gene

Domains & Families for GC06P121443 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P121443 Gene

Function for GC06P121443 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P121443 Gene

Localization for GC06P121443 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P121443 Gene

Pathways & Interactions for GC06P121443 Gene

SuperPathways for GC06P121443 Gene

No Data Available

Interacting Proteins for GC06P121443 Gene

Gene Ontology (GO) - Biological Process for GC06P121443 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P121443 Gene

Drugs & Compounds for GC06P121443 Gene

No Compound Related Data Available

Transcripts for GC06P121443 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P121443 Gene

No ASD Table

Relevant External Links for GC06P121443 Gene

GeneLoc Exon Structure for
GC06P121443

No data available for mRNA/cDNA for GC06P121443 Gene

Expression for GC06P121443 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P121443 Gene

Orthologs for GC06P121443 Gene

No data available for Orthologs and Evolution for GC06P121443 Gene

Paralogs for GC06P121443 Gene

No data available for Paralogs for GC06P121443 Gene

Variants for GC06P121443 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P121443 Gene

Disorders for GC06P121443 Gene

No disorders were found for GC06P121443 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P121443 Gene

Publications for GC06P121443 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W. … Terns M.P. (Mol. Cell. Biol. 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1

Products for GC06P121443 Gene

Sources for GC06P121443 Gene

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