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Aliases for GC06P119180 Gene

Subcategory (RNA class) for GC06P119180 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC06P119180 Gene

No Aliases found

ORGUL Members for GC06P119180 Gene

No data available for External Ids for GC06P119180 Gene

Summaries for GC06P119180 Gene

GeneCards Summary for GC06P119180 Gene

GC06P119180 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P119180 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC06P119180

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P119180 Gene

Genomics for GC06P119180 Gene

Regulatory Elements for GC06P119180 Gene

Enhancers for GC06P119180 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G119169 1 ENCODE 0.4 -6.4 -6431 6.3 PKNOX1 FOXA2 ATF1 ARID4B DMAP1 YY1 TCF12 GATA2 PAF1 SP5 FAM184A RNU6-194P MAN1A1 GC06P119180 ENSG00000220139
GH06G119260 1.3 Ensembl ENCODE 0.2 +82.1 82138 1.8 PKNOX1 FOXA2 ATF1 MLX ZFP64 ARID4B YY1 SLC30A9 FOS SP5 RNU6-194P CEP85L RPL13AP15 GC06P119180
GH06G119237 1 ENCODE 0.2 +58.1 58082 0.5 HNRNPUL1 ATF1 WRNIP1 BRCA1 YY1 ELK1 CBX5 ZNF143 FOS ZNF263 LOC644303 ASF1A RPL13AP15 GC06P119180
GH06G119240 1 Ensembl ENCODE 0.2 +61.6 61554 1.1 TEAD4 FEZF1 RAD21 YY1 POLR2A MIXL1 NFIA FOXA3 FOXA1 OSR2 RPL13AP15 GC06P119180
GH06G119258 1 ENCODE 0.2 +79.9 79927 1.1 FOXA2 ATF1 MLX ARID4B GATA2 FOS PPARG ZNF592 KAT8 SSRP1 RPL13AP15 GC06P119180
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P119180 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P119180 Gene

Chromosome:
6
Start:
119,179,381 bp from pter
End:
119,179,508 bp from pter
Size:
128 bases
Orientation:
Plus strand

Genomic View for GC06P119180 Gene

Genes around GC06P119180 on UCSC Golden Path with GeneCards custom track

GC06P119180 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P119180 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P119180 Gene

ORGUL Member Location for GC06P119180 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P119180 Gene

Proteins for GC06P119180 Gene

Post-translational modifications for GC06P119180 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P119180 Gene

Domains & Families for GC06P119180 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P119180 Gene

Function for GC06P119180 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P119180 Gene

Localization for GC06P119180 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P119180 Gene

Pathways & Interactions for GC06P119180 Gene

SuperPathways for GC06P119180 Gene

No Data Available

Interacting Proteins for GC06P119180 Gene

Gene Ontology (GO) - Biological Process for GC06P119180 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P119180 Gene

Drugs & Compounds for GC06P119180 Gene

No Compound Related Data Available

Transcripts for GC06P119180 Gene

fRNAdb Secondary structures for GC06P119180 Gene

  • FR390468
  • FR189454

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P119180 Gene

No ASD Table

Relevant External Links for GC06P119180 Gene

GeneLoc Exon Structure for
GC06P119180

No data available for mRNA/cDNA for GC06P119180 Gene

Expression for GC06P119180 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P119180 Gene

Orthologs for GC06P119180 Gene

No data available for Orthologs and Evolution for GC06P119180 Gene

Paralogs for GC06P119180 Gene

No data available for Paralogs for GC06P119180 Gene

Variants for GC06P119180 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P119180 Gene

Disorders for GC06P119180 Gene

No disorders were found for GC06P119180 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P119180 Gene

Publications for GC06P119180 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC06P119180 Gene

Sources for GC06P119180 Gene

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