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Aliases for GC06P110849 Gene

Subcategory (RNA class) for GC06P110849 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC06P110849 Gene

No Aliases found

ORGUL Members for GC06P110849 Gene

No data available for External Ids for GC06P110849 Gene

Summaries for GC06P110849 Gene

GeneCards Summary for GC06P110849 Gene

GC06P110849 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC06P110849 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P110849 Gene

Genomics for GC06P110849 Gene

Regulatory Elements for GC06P110849 Gene

Enhancers for GC06P110849 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G110819 1 ENCODE 0.3 -28.8 -28773 0.2 ATF1 ZNF766 GATA2 ELK1 KLF13 CAVIN1 ZNF592 MEF2D CREB3 PBX2 RNU6-957P RPF2 GTF3C6 CDK19 GC06P110849
GH06G110841 0.7 Ensembl 0.4 -7.2 -7245 0.2 CBX3 ZNF211 ZNF311 ZBTB7B ZNF507 ZNF544 ZNF26 ZNF169 ZNF350 ZNF416 ENSG00000272356 CNN2P9 ENSG00000220506 CDK19 GC06P110849
GH06G110820 0.9 Ensembl ENCODE 0.3 -27.6 -27619 1.1 SMARCE1 STAT1 NFRKB ZNF7 IRF1 FOXJ2 ZBTB33 RBFOX2 RNU6-957P RPF2 GTF3C6 CDK19 GC06P110849
GH06G110821 0.9 ENCODE 0.3 -28.6 -28553 0.2 HDAC1 ATF1 NFRKB GATA2 ELK1 ZBTB11 CEBPB NCOA1 USF2 ZEB2 RNU6-957P RPF2 GTF3C6 CDK19 GC06P110849
GH06G110826 0.8 Ensembl ENCODE 0.3 -21.7 -21745 1.6 JUND PKNOX1 ZNF316 PBX2 MAFG EMSY MAFK RPF2 RNU6-957P GTF3C6 AMD1 CDK19 GC06P110849
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P110849 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P110849 Gene

Chromosome:
6
Start:
110,848,545 bp from pter
End:
110,848,673 bp from pter
Size:
129 bases
Orientation:
Plus strand

Genomic View for GC06P110849 Gene

Genes around GC06P110849 on UCSC Golden Path with GeneCards custom track

GC06P110849 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P110849 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P110849 Gene

Proteins for GC06P110849 Gene

Post-translational modifications for GC06P110849 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P110849 Gene

Domains & Families for GC06P110849 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P110849 Gene

Function for GC06P110849 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P110849 Gene

Localization for GC06P110849 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P110849 Gene

Pathways & Interactions for GC06P110849 Gene

SuperPathways for GC06P110849 Gene

No Data Available

Interacting Proteins for GC06P110849 Gene

Gene Ontology (GO) - Biological Process for GC06P110849 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P110849 Gene

Drugs & Compounds for GC06P110849 Gene

No Compound Related Data Available

Transcripts for GC06P110849 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P110849 Gene

No ASD Table

Relevant External Links for GC06P110849 Gene

GeneLoc Exon Structure for
GC06P110849

No data available for mRNA/cDNA for GC06P110849 Gene

Expression for GC06P110849 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P110849 Gene

Orthologs for GC06P110849 Gene

No data available for Orthologs and Evolution for GC06P110849 Gene

Paralogs for GC06P110849 Gene

No data available for Paralogs for GC06P110849 Gene

Variants for GC06P110849 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P110849 Gene

Disorders for GC06P110849 Gene

No disorders were found for GC06P110849 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P110849 Gene

Publications for GC06P110849 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1
  2. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 1

Products for GC06P110849 Gene

Sources for GC06P110849 Gene

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