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Aliases for GC06P108423 Gene

Subcategory (RNA class) for GC06P108423 Gene

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Quality Score for this RNA gene is

6.2

Aliases for GC06P108423 Gene

No Aliases found

No data available for External Ids for GC06P108423 Gene

Summaries for GC06P108423 Gene

GeneCards Summary for GC06P108423 Gene

GC06P108423 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P108423 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

View fRNAdb secondary structures for GC06P108423

Additional gene information for GC06P108423 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P108423 Gene

Genomics for GC06P108423 Gene

Regulatory Elements for GC06P108423 Gene

Enhancers for GC06P108423 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H108408 0.7 ENCODE 0.4 -14.6 -14611 2 GATAD2A TFAP4 SAP130 HLF CEBPB CEBPG ZNF644 RAD21 YY1 NFIL3 LOC105377932 GC06P108423 GC06P108424
GH06H108451 0.7 Ensembl ENCODE 0.3 +30.5 30543 3 CTCF POLR2A JUN FOXO3 ENSG00000260273 GC06P108423 GC06P108424 ENSG00000271608
GH06H108463 0.7 ENCODE 0.3 +41.3 41307 1 SOX5 SOX13 GATAD2A FOXA2 HLF CEBPB CEBPG ZNF384 ZNF7 CEBPA GC06P108423 GC06P108424 ENSG00000271608
GH06H108464 0.7 Ensembl 0.3 +40.1 40050 0 MAFG DPF2 RARA FOSL1 ZFHX2 JUND ZNF316 MAFF GLIS1 NR2C1 GC06P108423 GC06P108424 ENSG00000271608
GH06H108541 1.4 Ensembl ENCODE dbSUPER 0.1 +119.1 119085 0 ELF3 HDGF ARNT YBX1 ZNF2 RAD21 ZNF366 SCRT2 ZNF143 ZNF391 ARMC2 RNU6-653P ARMC2-AS1 SEC63 OSTM1 NR2E1 ENSG00000271608 GC06P108423 GC06P108424
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P108423 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P108423 Gene

Chromosome:
6
Start:
108,423,051 bp from pter
End:
108,423,168 bp from pter
Size:
118 bases
Orientation:
Plus strand

Genomic View for GC06P108423 Gene

Genes around GC06P108423 on UCSC Golden Path with GeneCards custom track

GC06P108423 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P108423 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P108423 Gene

ORGUL Member Location for GC06P108423 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P108423 Gene

Proteins for GC06P108423 Gene

Post-translational modifications for GC06P108423 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P108423 Gene

Domains & Families for GC06P108423 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P108423 Gene

Function for GC06P108423 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P108423 Gene

Localization for GC06P108423 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P108423 Gene

Pathways & Interactions for GC06P108423 Gene

SuperPathways for GC06P108423 Gene

No Data Available

Interacting Proteins for GC06P108423 Gene

Gene Ontology (GO) - Biological Process for GC06P108423 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P108423 Gene

Drugs & Compounds for GC06P108423 Gene

No Compound Related Data Available

Transcripts for GC06P108423 Gene

fRNAdb Secondary structures for GC06P108423 Gene

  • FR199857
  • FR407430

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P108423 Gene

No ASD Table

Relevant External Links for GC06P108423 Gene

GeneLoc Exon Structure for
GC06P108423

No data available for mRNA/cDNA for GC06P108423 Gene

Expression for GC06P108423 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P108423 Gene

Orthologs for GC06P108423 Gene

No data available for Orthologs and Evolution for GC06P108423 Gene

Paralogs for GC06P108423 Gene

No data available for Paralogs for GC06P108423 Gene

Variants for GC06P108423 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P108423 Gene

Disorders for GC06P108423 Gene

No disorders were found for GC06P108423 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P108423 Gene

Publications for GC06P108423 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for GC06P108423 Gene

Sources for GC06P108423 Gene

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