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Aliases for GC06P100560 Gene

Subcategory (RNA class) for GC06P100560 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC06P100560 Gene

No Aliases found

ORGUL Members for GC06P100560 Gene

No data available for External Ids for GC06P100560 Gene

Summaries for GC06P100560 Gene

GeneCards Summary for GC06P100560 Gene

GC06P100560 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P100560 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC06P100560

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P100560 Gene

Genomics for GC06P100560 Gene

Regulatory Elements for GC06P100560 Gene

Enhancers for GC06P100560 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G100560 1.4 ENCODE 0.7 +0.2 176 0.8 PKNOX1 ZSCAN4 ASCC3 GC06P100560 GC06M100662
GH06G100632 1 Ensembl ENCODE 0.2 +72.8 72757 1.6 SOX5 SOX13 PKNOX1 FOXA2 RFX1 SAP130 FOXA3 HIC1 PRDM6 BCL11A ASCC3 GC06P100560 GC06M100662
GH06G100617 0.7 ENCODE 0.2 +57.7 57729 1.3 JUN USF2 CEBPB CEBPG DPF2 EP300 ZKSCAN1 CTBP1 JUND STAT3 ASCC3 GC06P100560 GC06M100662
GH06G100619 0.4 ENCODE 0.2 +59.9 59861 1.1 ZNF146 ASCC3 GC06P100560 GC06M100662
GH06G100662 0.7 ENCODE 0.1 +103.1 103111 1.5 CTCF TRIM22 RAD21 JUND ZNF316 ZNF143 SMC3 FOXP2 IRF1 MAFK ASCC3 GRIK2 GC06M100662 GC06P100560
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P100560 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P100560 Gene

Chromosome:
6
Start:
100,560,468 bp from pter
End:
100,560,628 bp from pter
Size:
161 bases
Orientation:
Plus strand

Genomic View for GC06P100560 Gene

Genes around GC06P100560 on UCSC Golden Path with GeneCards custom track

GC06P100560 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P100560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P100560 Gene

ORGUL Member Location for GC06P100560 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P100560 Gene

Proteins for GC06P100560 Gene

Post-translational modifications for GC06P100560 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P100560 Gene

Domains & Families for GC06P100560 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P100560 Gene

Function for GC06P100560 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P100560 Gene

Localization for GC06P100560 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P100560 Gene

Pathways & Interactions for GC06P100560 Gene

SuperPathways for GC06P100560 Gene

No Data Available

Interacting Proteins for GC06P100560 Gene

Gene Ontology (GO) - Biological Process for GC06P100560 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P100560 Gene

Drugs & Compounds for GC06P100560 Gene

No Compound Related Data Available

Transcripts for GC06P100560 Gene

fRNAdb Secondary structures for GC06P100560 Gene

  • FR295912
  • FR005221

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P100560 Gene

No ASD Table

Relevant External Links for GC06P100560 Gene

GeneLoc Exon Structure for
GC06P100560

No data available for mRNA/cDNA for GC06P100560 Gene

Expression for GC06P100560 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P100560 Gene

Orthologs for GC06P100560 Gene

No data available for Orthologs and Evolution for GC06P100560 Gene

Paralogs for GC06P100560 Gene

No data available for Paralogs for GC06P100560 Gene

Variants for GC06P100560 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P100560 Gene

Disorders for GC06P100560 Gene

No disorders were found for GC06P100560 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P100560 Gene

Publications for GC06P100560 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC06P100560 Gene

Sources for GC06P100560 Gene

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