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Aliases for GC06P089977 Gene

Subcategory (RNA class) for GC06P089977 Gene

undefined

Quality Score for this RNA gene is

0.4

Aliases for GC06P089977 Gene

No Aliases found

ORGUL Members for GC06P089977 Gene

No data available for External Ids for GC06P089977 Gene

Summaries for GC06P089977 Gene

GeneCards Summary for GC06P089977 Gene

GC06P089977 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P089977 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC06P089977

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P089977 Gene

Genomics for GC06P089977 Gene

Regulatory Elements for GC06P089977 Gene

Enhancers for GC06P089977 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G089976 2.4 Ensembl ENCODE dbSUPER 0.7 -0.3 -287 2.9 PKNOX1 FEZF1 ZNF2 ZNF302 ZNF263 TSHZ1 ZNF488 SMARCA4 MYNN WT1 ENSG00000226455 GC06P089977
GH06G089984 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.8 8792 4.1 NFIB CEBPG ZFHX2 POLR2A ZNF366 PRDM10 EGR2 EZH2 BHLHE40 REST ENSG00000226455 BACH2 GC06P089977 PIR39704
GH06G089997 1.4 Ensembl ENCODE dbSUPER 0.3 +20.7 20702 3.1 PKNOX1 INSM2 ZNF76 KLF17 FEZF1 ZNF2 ZNF766 ELK1 ZNF366 ZSCAN5C LOC644269 PM20D2 PIR39704 GC06P089977
GH06G089950 1 Ensembl ENCODE 0.3 -25.6 -25550 3.7 SOX13 CTCF FOXA2 MAX RAD21 RARA FOS NR2F6 ZNF263 SOX5 ENSG00000226455 GC06P089977
GH06G089974 0.4 ENCODE 0.7 -2.7 -2729 1.2 ZKSCAN1 ENSG00000226455 GC06P089977
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P089977 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P089977 Gene

Chromosome:
6
Start:
89,977,897 bp from pter
End:
89,978,130 bp from pter
Size:
234 bases
Orientation:
Plus strand

Genomic View for GC06P089977 Gene

Genes around GC06P089977 on UCSC Golden Path with GeneCards custom track

GC06P089977 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P089977 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P089977 Gene

ORGUL Member Location for GC06P089977 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P089977 Gene

Proteins for GC06P089977 Gene

Post-translational modifications for GC06P089977 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P089977 Gene

Domains & Families for GC06P089977 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P089977 Gene

Function for GC06P089977 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P089977 Gene

Localization for GC06P089977 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P089977 Gene

Pathways & Interactions for GC06P089977 Gene

SuperPathways for GC06P089977 Gene

No Data Available

Interacting Proteins for GC06P089977 Gene

Gene Ontology (GO) - Biological Process for GC06P089977 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P089977 Gene

Drugs & Compounds for GC06P089977 Gene

No Compound Related Data Available

Transcripts for GC06P089977 Gene

fRNAdb Secondary structures for GC06P089977 Gene

  • FR016092
  • FR322940

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P089977 Gene

No ASD Table

Relevant External Links for GC06P089977 Gene

GeneLoc Exon Structure for
GC06P089977

No data available for mRNA/cDNA for GC06P089977 Gene

Expression for GC06P089977 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P089977 Gene

Orthologs for GC06P089977 Gene

No data available for Orthologs and Evolution for GC06P089977 Gene

Paralogs for GC06P089977 Gene

No data available for Paralogs for GC06P089977 Gene

Variants for GC06P089977 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P089977 Gene

Disorders for GC06P089977 Gene

No disorders were found for GC06P089977 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P089977 Gene

Publications for GC06P089977 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC06P089977 Gene

Sources for GC06P089977 Gene

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