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Aliases for GC06P083900 Gene

Subcategory (RNA class) for GC06P083900 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for GC06P083900 Gene

No Aliases found

ORGUL Members for GC06P083900 Gene

No data available for External Ids for GC06P083900 Gene

Summaries for GC06P083900 Gene

GeneCards Summary for GC06P083900 Gene

GC06P083900 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC06P083900 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC06P083900

Additional gene information for GC06P083900 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P083900 Gene

Genomics for GC06P083900 Gene

Regulatory Elements for GC06P083900 Gene

Enhancers for GC06P083900 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H083866 1.7 FANTOM5 Ensembl ENCODE 0.3 -32.6 -32618 2 PKNOX1 FEZF1 ZNF2 CBX5 ZNF302 ZNF416 ZNF143 FOS ZNF548 CEBPZ CEP162 DOPEY1 UBE3D RWDD2A RIPPLY2 CYB5R4 PIR41363 GC06P083900
GH06H083884 0.8 ENCODE 0.4 -15.9 -15894 0 ELF3 ARNT FEZF1 ZNF2 RAD21 CHAMP1 GATA2 ZNF143 RCOR1 MIXL1 CEP162 CYB5R4 RIPPLY2 GC06P083900 PIR41363
GH06H083974 1.1 ENCODE 0.2 +75.6 75622 3 ATF1 ARNT TCF12 ZNF766 CBX5 GATA2 ELK1 FOS ATF7 CAVIN1 RIPPLY2 ENSG00000228679 GC06P083900
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P083900 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P083900 Gene

Chromosome:
6
Start:
83,900,540 bp from pter
End:
83,900,573 bp from pter
Size:
34 bases
Orientation:
Plus strand

Genomic View for GC06P083900 Gene

Genes around GC06P083900 on UCSC Golden Path with GeneCards custom track

GC06P083900 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P083900 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P083900 Gene

ORGUL Member Location for GC06P083900 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P083900 Gene

Proteins for GC06P083900 Gene

Post-translational modifications for GC06P083900 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P083900 Gene

Domains & Families for GC06P083900 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P083900 Gene

Function for GC06P083900 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P083900 Gene

Localization for GC06P083900 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P083900 Gene

Pathways & Interactions for GC06P083900 Gene

SuperPathways for GC06P083900 Gene

No Data Available

Interacting Proteins for GC06P083900 Gene

Gene Ontology (GO) - Biological Process for GC06P083900 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P083900 Gene

Drugs & Compounds for GC06P083900 Gene

No Compound Related Data Available

Transcripts for GC06P083900 Gene

fRNAdb Secondary structures for GC06P083900 Gene

  • FR260384
  • FR138338

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P083900 Gene

No ASD Table

Relevant External Links for GC06P083900 Gene

GeneLoc Exon Structure for
GC06P083900

No data available for mRNA/cDNA for GC06P083900 Gene

Expression for GC06P083900 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P083900 Gene

Orthologs for GC06P083900 Gene

No data available for Orthologs and Evolution for GC06P083900 Gene

Paralogs for GC06P083900 Gene

No data available for Paralogs for GC06P083900 Gene

Variants for GC06P083900 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P083900 Gene

Disorders for GC06P083900 Gene

No disorders were found for GC06P083900 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P083900 Gene

Publications for GC06P083900 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC06P083900 Gene

Sources for GC06P083900 Gene

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