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Aliases for GC06P047823 Gene

Subcategory (RNA class) for GC06P047823 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC06P047823 Gene

No Aliases found

ORGUL Members for GC06P047823 Gene

No data available for External Ids for GC06P047823 Gene

Summaries for GC06P047823 Gene

GeneCards Summary for GC06P047823 Gene

GC06P047823 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC06P047823 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P047823 Gene

Genomics for GC06P047823 Gene

Regulatory Elements for GC06P047823 Gene

Enhancers for GC06P047823 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G047787 1.1 Ensembl ENCODE 0.3 -34.5 -34535 2.2 RB1 ZNF2 ZNF48 RAD21 RARA YY1 ZSCAN5C SCRT2 ZNF143 ZNF207 RNU1-105P OPN5 GC06P047823
GH06G047780 1 Ensembl ENCODE 0.3 -42.5 -42488 0.6 CTCF ZNF654 RFX1 ZSCAN26 TRIM22 REST ZBTB8A ZNF2 RAD21 ZNF101 OPN5 GC06P047823
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P047823 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P047823 Gene

Chromosome:
6
Start:
47,823,389 bp from pter
End:
47,823,550 bp from pter
Size:
162 bases
Orientation:
Plus strand

Genomic View for GC06P047823 Gene

Genes around GC06P047823 on UCSC Golden Path with GeneCards custom track

GC06P047823 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P047823 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P047823 Gene

Proteins for GC06P047823 Gene

Post-translational modifications for GC06P047823 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P047823 Gene

Domains & Families for GC06P047823 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P047823 Gene

Function for GC06P047823 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P047823 Gene

Localization for GC06P047823 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P047823 Gene

Pathways & Interactions for GC06P047823 Gene

SuperPathways for GC06P047823 Gene

No Data Available

Interacting Proteins for GC06P047823 Gene

Gene Ontology (GO) - Biological Process for GC06P047823 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P047823 Gene

Drugs & Compounds for GC06P047823 Gene

No Compound Related Data Available

Transcripts for GC06P047823 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P047823 Gene

No ASD Table

Relevant External Links for GC06P047823 Gene

GeneLoc Exon Structure for
GC06P047823

No data available for mRNA/cDNA for GC06P047823 Gene

Expression for GC06P047823 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P047823 Gene

Orthologs for GC06P047823 Gene

No data available for Orthologs and Evolution for GC06P047823 Gene

Paralogs for GC06P047823 Gene

No data available for Paralogs for GC06P047823 Gene

Variants for GC06P047823 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P047823 Gene

Disorders for GC06P047823 Gene

No disorders were found for GC06P047823 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P047823 Gene

Publications for GC06P047823 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba P.S. … Laird-Offringa I.A. (J. Biol. Chem. 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  3. Crystal structure at 1.92-A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C. … Nagai K. (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L. … Rosbash M. (Proc. Natl. Acad. Sci. U.S.A. 1990) 1

Products for GC06P047823 Gene

Sources for GC06P047823 Gene

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