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Aliases for GC06P045490 Gene

Subcategory (RNA class) for GC06P045490 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC06P045490 Gene

No Aliases found

ORGUL Members for GC06P045490 Gene

No data available for External Ids for GC06P045490 Gene

Summaries for GC06P045490 Gene

GeneCards Summary for GC06P045490 Gene

GC06P045490 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC06P045490 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC06P045490

Additional gene information for GC06P045490 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P045490 Gene

Genomics for GC06P045490 Gene

Regulatory Elements for GC06P045490 Gene

Enhancers for GC06P045490 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H045443 2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -44.5 -44507 5 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 RUNX2 ENSG00000271857 GC06P045490
GH06H045479 1.3 Ensembl ENCODE dbSUPER 0.4 -9.5 -9545 1 PKNOX1 BACH1 MAX CEBPG FEZF1 EBF1 BATF POLR2A IKZF2 JUNB RUNX2 GC06P045490 ENSG00000271857
GH06H045494 0.7 Ensembl ENCODE 0.7 +4.4 4423 0 POLR2A MAX MYC GC06P045490 RUNX2-AS1
GH06H045504 1.2 Ensembl ENCODE dbSUPER 0.4 +14.8 14836 2 ZBTB40 ETS1 ZFHX2 FOS ZNF600 EGR2 ZFP37 MNT REST ELF1 GC06P045490 RUNX2-AS1
GH06H045477 1.1 Ensembl ENCODE dbSUPER 0.4 -12.4 -12355 1 SCRT1 JUN GABPA FOSL1 ZFHX2 JUND SCRT2 FOS CREM EGR2 RUNX2 GC06P045490 ENSG00000271857
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P045490 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P045490 Gene

Chromosome:
6
Start:
45,490,403 bp from pter
End:
45,490,566 bp from pter
Size:
164 bases
Orientation:
Plus strand

Genomic View for GC06P045490 Gene

Genes around GC06P045490 on UCSC Golden Path with GeneCards custom track

GC06P045490 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P045490 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC06P045490 Gene

ORGUL Member Location for GC06P045490 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P045490 Gene

Proteins for GC06P045490 Gene

Post-translational modifications for GC06P045490 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P045490 Gene

Domains & Families for GC06P045490 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P045490 Gene

Function for GC06P045490 Gene

Phenotypes From GWAS Catalog for GC06P045490 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P045490 Gene

Localization for GC06P045490 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P045490 Gene

Pathways & Interactions for GC06P045490 Gene

SuperPathways for GC06P045490 Gene

No Data Available

Interacting Proteins for GC06P045490 Gene

Gene Ontology (GO) - Biological Process for GC06P045490 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P045490 Gene

Drugs & Compounds for GC06P045490 Gene

No Compound Related Data Available

Transcripts for GC06P045490 Gene

fRNAdb Secondary structures for GC06P045490 Gene

  • FR145174
  • FR079006

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P045490 Gene

No ASD Table

Relevant External Links for GC06P045490 Gene

GeneLoc Exon Structure for
GC06P045490

No data available for mRNA/cDNA for GC06P045490 Gene

Expression for GC06P045490 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P045490 Gene

Orthologs for GC06P045490 Gene

No data available for Orthologs and Evolution for GC06P045490 Gene

Paralogs for GC06P045490 Gene

No data available for Paralogs for GC06P045490 Gene

Variants for GC06P045490 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P045490 Gene

Disorders for GC06P045490 Gene

No disorders were found for GC06P045490 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P045490 Gene

Publications for GC06P045490 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC06P045490 Gene

Sources for GC06P045490 Gene

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