Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC06P043418 Gene

Subcategory (RNA class) for GC06P043418 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC06P043418 Gene

No Aliases found

ORGUL Members for GC06P043418 Gene

No data available for External Ids for GC06P043418 Gene

Summaries for GC06P043418 Gene

GeneCards Summary for GC06P043418 Gene

GC06P043418 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC06P043418 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC06P043418 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P043418 Gene

Genomics for GC06P043418 Gene

Regulatory Elements for GC06P043418 Gene

Enhancers for GC06P043418 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H043421 0.7 ENCODE 0.7 +4.0 4003 1 ZNF680 ZFP64 ZC3H11A ZNF140 REST ZNF623 ZNF781 ZNF518A ZNF697 ZNF560 ZNF318 POLR1C ABCC10 CUL7 RPS2P29 ENSG00000272223 XPO5 RPL34P14 DLK2 PTK7
GH06H043390 1.5 Ensembl ENCODE dbSUPER 0.3 -25.6 -25641 3 HDGF PKNOX1 ARNT TCF12 ZNF766 GATA2 ZNF592 SMARCA4 GLIS1 PBX2 ABCC10 CRIP3 RPL12P47 DLK2 TTBK1 DNPH1 POLR1C YIPF3 LRRC73 ZNF318
GH06H043398 0.6 ENCODE 0.4 -19.9 -19906 0 CTCF ZNF654 REST RAD21 FOSL1 JUND SMC3 PRDM10 FOS LOC105375065 GC06P043418
GH06H043408 0.2 ENCODE 0.4 -9.8 -9827 0 ZNF318 TTBK1 DNPH1 DLK2 TJAP1 RNU6-1113P POLR1C YIPF3 LRRC73 GC06P043418
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P043418 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P043418 Gene

Chromosome:
6
Start:
43,418,093 bp from pter
End:
43,418,189 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for GC06P043418 Gene

Genes around GC06P043418 on UCSC Golden Path with GeneCards custom track

GC06P043418 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P043418 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P043418 Gene

Proteins for GC06P043418 Gene

Post-translational modifications for GC06P043418 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P043418 Gene

Domains & Families for GC06P043418 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P043418 Gene

Function for GC06P043418 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P043418 Gene

Localization for GC06P043418 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC06P043418 Gene

Pathways & Interactions for GC06P043418 Gene

SuperPathways for GC06P043418 Gene

No Data Available

Interacting Proteins for GC06P043418 Gene

Gene Ontology (GO) - Biological Process for GC06P043418 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P043418 Gene

Drugs & Compounds for GC06P043418 Gene

No Compound Related Data Available

Transcripts for GC06P043418 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P043418 Gene

No ASD Table

Relevant External Links for GC06P043418 Gene

GeneLoc Exon Structure for
GC06P043418

No data available for mRNA/cDNA for GC06P043418 Gene

Expression for GC06P043418 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P043418 Gene

Orthologs for GC06P043418 Gene

No data available for Orthologs and Evolution for GC06P043418 Gene

Paralogs for GC06P043418 Gene

No data available for Paralogs for GC06P043418 Gene

Variants for GC06P043418 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P043418 Gene

Disorders for GC06P043418 Gene

No disorders were found for GC06P043418 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P043418 Gene

Publications for GC06P043418 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC06P043418 Gene

Sources for GC06P043418 Gene

Content
Loading form....