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Aliases for GC06P042664 Gene

Subcategory (RNA class) for GC06P042664 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC06P042664 Gene

No Aliases found

ORGUL Members for GC06P042664 Gene

No data available for External Ids for GC06P042664 Gene

Summaries for GC06P042664 Gene

GeneCards Summary for GC06P042664 Gene

GC06P042664 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC06P042664 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC06P042664 Gene

Genomics for GC06P042664 Gene

Regulatory Elements for GC06P042664 Gene

Enhancers for GC06P042664 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G042661 0.8 ENCODE 0.7 -2.4 -2404 0.2 CTCF ESRRA RB1 DDX20 ZNF384 ZNF2 ZSCAN9 RAD21 RFX5 RFXANK GC06P042664 UBR2
GH06G042660 0.5 FANTOM5 0.7 -3.0 -3006 0.4 ZNF316 MAFG EMSY MAFK UBR2 GC06P042664
GH06G042568 1.5 FANTOM5 Ensembl ENCODE 0.1 -94.5 -94490 1.9 HDGF PKNOX1 FOXA2 ATF1 FOS JUNB ZNF592 SMARCA4 PBX2 NBN UBR2 PRPH2 RNU6-890P CNPY3 TRERF1 GC06P042664
GH06G042624 0.4 ENCODE 0.3 -39.5 -39490 1.3 ZNF652 FOXA1 PRPH2 RNU6-890P RPL7L1 RN7SL403P KLC4 CUL7 PPP2R5D KLHDC3 MEA1 UBR2
GH06G042563 1.2 ENCODE 0.1 -99.1 -99138 3.4 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 PRPH2 RNU6-890P RPS2P29 ENSG00000271754 UBR2 GC06P042664
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC06P042664 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC06P042664 Gene

Chromosome:
6
Start:
42,664,161 bp from pter
End:
42,664,268 bp from pter
Size:
108 bases
Orientation:
Plus strand

Genomic View for GC06P042664 Gene

Genes around GC06P042664 on UCSC Golden Path with GeneCards custom track

GC06P042664 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC06P042664 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC06P042664 Gene

Proteins for GC06P042664 Gene

Post-translational modifications for GC06P042664 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC06P042664 Gene

Domains & Families for GC06P042664 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC06P042664 Gene

Function for GC06P042664 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC06P042664 Gene

Localization for GC06P042664 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC06P042664 Gene

Pathways & Interactions for GC06P042664 Gene

SuperPathways for GC06P042664 Gene

No Data Available

Interacting Proteins for GC06P042664 Gene

Gene Ontology (GO) - Biological Process for GC06P042664 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC06P042664 Gene

Drugs & Compounds for GC06P042664 Gene

No Compound Related Data Available

Transcripts for GC06P042664 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC06P042664 Gene

No ASD Table

Relevant External Links for GC06P042664 Gene

GeneLoc Exon Structure for
GC06P042664

No data available for mRNA/cDNA for GC06P042664 Gene

Expression for GC06P042664 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC06P042664 Gene

Orthologs for GC06P042664 Gene

No data available for Orthologs and Evolution for GC06P042664 Gene

Paralogs for GC06P042664 Gene

No data available for Paralogs for GC06P042664 Gene

Variants for GC06P042664 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC06P042664 Gene

Disorders for GC06P042664 Gene

No disorders were found for GC06P042664 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC06P042664 Gene

Publications for GC06P042664 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC06P042664 Gene

Sources for GC06P042664 Gene

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