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Aliases for GC05P139300 Gene

Subcategory (RNA class) for GC05P139300 Gene

rRNA

Quality Score for this RNA gene is

12

Aliases for GC05P139300 Gene

No Aliases found

ORGUL Members for GC05P139300 Gene

No data available for External Ids for GC05P139300 Gene

Summaries for GC05P139300 Gene

GeneCards Summary for GC05P139300 Gene

GC05P139300 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC05P139300 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC05P139300 Gene

Genomics for GC05P139300 Gene

Regulatory Elements for GC05P139300 Gene

Enhancers for GC05P139300 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G139297 1.2 Ensembl dbSUPER 0.7 -2.2 -2151 0.2 ATF1 PKNOX1 CREB3L1 ZNF76 SIN3A FEZF1 ZNF2 ZBTB40 RAD21 YY1 MATR3 ENSG00000252213 PAIP2 SLC23A1 SIL1 GC05P139300
GH05G139292 1.4 ENCODE dbSUPER 0.4 -5.0 -5009 3.8 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 ZNF610 ZNF585B KDM3B PURA DNAJC18 LOC101929719 SIL1 GC05P139300
GH05G139298 0.7 Ensembl dbSUPER 0.7 -1.4 -1351 0.2 POLR2A ZBTB33 MATR3 ENSG00000252213 PAIP2 SLC23A1 GC05P139300 SIL1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC05P139300 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC05P139300 Gene

Chromosome:
5
Start:
139,299,851 bp from pter
End:
139,299,968 bp from pter
Size:
118 bases
Orientation:
Plus strand

Genomic View for GC05P139300 Gene

Genes around GC05P139300 on UCSC Golden Path with GeneCards custom track

GC05P139300 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC05P139300 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC05P139300 Gene

Proteins for GC05P139300 Gene

Post-translational modifications for GC05P139300 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC05P139300 Gene

Domains & Families for GC05P139300 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC05P139300 Gene

Function for GC05P139300 Gene

Animal Model Products

miRNA for GC05P139300 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC05P139300 Gene

Localization for GC05P139300 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC05P139300 Gene

Pathways & Interactions for GC05P139300 Gene

SuperPathways for GC05P139300 Gene

No Data Available

Interacting Proteins for GC05P139300 Gene

Gene Ontology (GO) - Biological Process for GC05P139300 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC05P139300 Gene

Drugs & Compounds for GC05P139300 Gene

No Compound Related Data Available

Transcripts for GC05P139300 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC05P139300 Gene

No ASD Table

Relevant External Links for GC05P139300 Gene

GeneLoc Exon Structure for
GC05P139300

No data available for mRNA/cDNA for GC05P139300 Gene

Expression for GC05P139300 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC05P139300 Gene

Orthologs for GC05P139300 Gene

No data available for Orthologs and Evolution for GC05P139300 Gene

Paralogs for GC05P139300 Gene

No data available for Paralogs for GC05P139300 Gene

Variants for GC05P139300 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC05P139300 Gene

Disorders for GC05P139300 Gene

No disorders were found for GC05P139300 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC05P139300 Gene

Publications for GC05P139300 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for GC05P139300 Gene

Sources for GC05P139300 Gene

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