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Aliases for GC01M030974 Gene

Subcategory (RNA class) for GC01M030974 Gene

snoRNA

Quality Score for this RNA gene is

4

Aliases for GC01M030974 Gene

No Aliases found

ORGUL Members for GC01M030974 Gene

No data available for External Ids for GC01M030974 Gene

Summaries for GC01M030974 Gene

GeneCards Summary for GC01M030974 Gene

GC01M030974 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC01M030974 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC01M030974

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC01M030974 Gene

Genomics for GC01M030974 Gene

Regulatory Elements for GC01M030974 Gene

Enhancers for GC01M030974 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G030971 0.9 Ensembl 0.7 -3.7 -3664 0.2 HNRNPUL1 FOXA2 PKNOX1 ATF1 MLX ARID4B DMAP1 SLC30A9 FOS SP5 SNORD103B GC01M030974 SNORD103C GC01P030988
GH01G030974 1.1 Ensembl ENCODE 0.4 -7.5 -7499 1.9 HDAC1 ATF1 FOXA2 PKNOX1 RARA ZNF766 GATA4 GATA2 ELK1 CREM SNORD103B GC01M030974 SNORD103C GC01P030988
GH01G030977 1 ENCODE 0.4 -9.0 -8992 0.2 FOXA2 ATF1 MLX ARID4B ZNF2 YY1 SP5 MXD4 MIER2 PPARG SNORD103B SNORD103C GC01M030974 GC01P030988
GH01G030980 0.6 ENCODE 0.4 -13.2 -13244 1.1 ELF3 FOXA2 TFE3 TAL1 ZEB2 REST SMARCA4 POLR2A TRIM24 SNORD103B GC01P030988 GC01M030974 SNORD103C
GH01G030982 0.5 Ensembl 0.4 -14.7 -14664 1.0 CTCF ZNF316 RAD21 SPI1 SNORD103B GC01P030988 GC01M030974 SNORD103C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC01M030974 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC01M030974 Gene

Chromosome:
1
Start:
30,968,162 bp from pter
End:
30,968,237 bp from pter
Size:
76 bases
Orientation:
Minus strand

Genomic View for GC01M030974 Gene

Genes around GC01M030974 on UCSC Golden Path with GeneCards custom track

GC01M030974 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC01M030974 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC01M030974 Gene

ORGUL Member Location for GC01M030974 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC01M030974 Gene

Proteins for GC01M030974 Gene

Post-translational modifications for GC01M030974 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC01M030974 Gene

Domains & Families for GC01M030974 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC01M030974 Gene

Function for GC01M030974 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC01M030974 Gene

Localization for GC01M030974 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC01M030974 Gene

Pathways & Interactions for GC01M030974 Gene

SuperPathways for GC01M030974 Gene

No Data Available

Interacting Proteins for GC01M030974 Gene

Gene Ontology (GO) - Biological Process for GC01M030974 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC01M030974 Gene

Drugs & Compounds for GC01M030974 Gene

No Compound Related Data Available

Transcripts for GC01M030974 Gene

fRNAdb Secondary structures for GC01M030974 Gene

  • FR326263
  • FR260785

Alternative Splicing Database (ASD) splice patterns (SP) for GC01M030974 Gene

No ASD Table

Relevant External Links for GC01M030974 Gene

GeneLoc Exon Structure for
GC01M030974

No data available for mRNA/cDNA for GC01M030974 Gene

Expression for GC01M030974 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC01M030974 Gene

Orthologs for GC01M030974 Gene

No data available for Orthologs and Evolution for GC01M030974 Gene

Paralogs for GC01M030974 Gene

No data available for Paralogs for GC01M030974 Gene

Variants for GC01M030974 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC01M030974 Gene

Disorders for GC01M030974 Gene

No disorders were found for GC01M030974 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC01M030974 Gene

Publications for GC01M030974 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T. (Cell 2002) 1
  4. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 1

Products for GC01M030974 Gene

Sources for GC01M030974 Gene

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