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Aliases for GBAP1 Gene

Aliases for GBAP1 Gene

  • Glucosidase, Beta, Acid Pseudogene 1 2 3
  • Glucosidase, Beta; Acid, Pseudogene 2 3
  • Glucosylceramidase-Like Protein 3
  • GBAP 3

External Ids for GBAP1 Gene

Previous HGNC Symbols for GBAP1 Gene

  • GBAP

Previous GeneCards Identifiers for GBAP1 Gene

  • GC01M126547

Summaries for GBAP1 Gene

GeneCards Summary for GBAP1 Gene

GBAP1 (Glucosidase, Beta, Acid Pseudogene 1) is a Pseudogene.

Gene Wiki entry for GBAP1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GBAP1 Gene

Genomics for GBAP1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for GBAP1 Gene

Chromosome:
1
Start:
155,213,821 bp from pter
End:
155,227,534 bp from pter
Size:
13,714 bases
Orientation:
Minus strand

Genomic View for GBAP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GBAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GBAP1 Gene

No data available for Regulatory Elements for GBAP1 Gene

Proteins for GBAP1 Gene

Post-translational modifications for GBAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GBAP1 Gene

Domains & Families for GBAP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GBAP1 Gene

Function for GBAP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GBAP1 Gene

Localization for GBAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GBAP1 Gene

Pathways & Interactions for GBAP1 Gene

SuperPathways for GBAP1 Gene

No Data Available

Interacting Proteins for GBAP1 Gene

Gene Ontology (GO) - Biological Process for GBAP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GBAP1 Gene

Drugs & Compounds for GBAP1 Gene

No Compound Related Data Available

Transcripts for GBAP1 Gene

mRNA/cDNA for GBAP1 Gene

(9) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for GBAP1 Gene

Glucosidase, beta, acid pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GBAP1 Gene

No ASD Table

Relevant External Links for GBAP1 Gene

GeneLoc Exon Structure for
GBAP1
ECgene alternative splicing isoforms for
GBAP1

Expression for GBAP1 Gene

mRNA expression in normal human tissues for GBAP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for GBAP1 Gene Hs.719930

genes like me logo Genes that share expression patterns with GBAP1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for GBAP1 Gene

Orthologs for GBAP1 Gene

Evolution for GBAP1 Gene

ENSEMBL:
Gene Tree for GBAP1 (if available)
TreeFam:
Gene Tree for GBAP1 (if available)

No data available for Orthologs for GBAP1 Gene

Paralogs for GBAP1 Gene

No data available for Paralogs for GBAP1 Gene

Variants for GBAP1 Gene

Sequence variations from dbSNP and Humsavar for GBAP1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs3835732 -- 155,227,764(-) CCCCC(-/C)ACCCA upstream-variant-2KB
rs4024046 -- 155,224,351(+) CCTCA(-/AT/TA)TGATC intron-variant
rs5777942 -- 155,224,350(+) ACCTC(-/AT)ATGAT intron-variant
rs56824533 -- 155,226,279(+) AAAAA(-/A)GAAAG intron-variant
rs67837137 -- 155,226,354(+) AAGAA(-/AAAG)AAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GBAP1 Gene

Variant ID Type Subtype PubMed ID
nsv464084 CNV Loss 19166990
dgv3n68 CNV Loss 17160897
dgv132e1 CNV Complex 17122850
nsv470741 CNV Loss 18288195
nsv872457 CNV Loss 21882294
nsv527682 CNV Gain 19592680
nsv2988 CNV Insertion 18451855
nsv8458 CNV Gain 18304495
esv28935 CNV Gain 19812545
nsv8469 CNV Gain 18304495
esv2421617 CNV Duplication 20811451
nsv436038 CNV Insertion 17901297
nsv514011 CNV Gain 21397061
nsv441717 CNV CNV 18776908
nsv516159 CNV Gain 19592680

Relevant External Links for GBAP1 Gene

HapMap Linkage Disequilibrium report
GBAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GBAP1 Gene

Disorders for GBAP1 Gene

Relevant External Links for GBAP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GBAP1
genes like me logo Genes that share disorders with GBAP1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GBAP1 Gene

Publications for GBAP1 Gene

  1. Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PMID: 22797727) Okada Y. … Tanaka T. (Nat. Genet. 2012) 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  4. Determination of haploid DNA sequences in humans: application to the glucocerebrosidase pseudogene. (PMID: 12180141) MartA-nez-Arias R. … Comas D. (DNA Seq. 2002) 67
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for GBAP1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate GBAP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for GBAP1
    • Block miRNA regulation of GBAP1 using miScript Target Protectors

    Sources for GBAP1 Gene

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