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Aliases for GATA6 Gene

Aliases for GATA6 Gene

  • GATA Binding Protein 6 2 3
  • GATA-Binding Protein 6 2
  • GATA-Binding Factor 6 4
  • AVSD5 6
  • PACHD 6
  • ASD9 6

External Ids for GATA6 Gene

Previous GeneCards Identifiers for GATA6 Gene

  • GC18P019625
  • GC18P019481
  • GC18P018003
  • GC18P018001
  • GC18P019749
  • GC18P016596

Summaries for GATA6 Gene

Entrez Gene Summary for GATA6 Gene

  • This gene is a member of a small family of zinc finger transcription factors that play an important role in the regulation of cellular differentiation and organogenesis during vertebrate development. This gene is expressed during early embryogenesis and localizes to endo- and mesodermally derived cells during later embryogenesis and thereby plays an important role in gut, lung, and heart development. Mutations in this gene are associated with several congenital defects. [provided by RefSeq, Mar 2012]

GeneCards Summary for GATA6 Gene

GATA6 (GATA Binding Protein 6) is a Protein Coding gene. Diseases associated with GATA6 include atrioventricular septal defect 5 and atrial septal defect 9. Among its related pathways are Heart Development and Hemostasis. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and protein kinase binding. An important paralog of this gene is GATA5.

UniProtKB/Swiss-Prot for GATA6 Gene

  • Transcriptional activator that regulates SEMA3C and PLXNA2. Thought to be important for regulating terminal differentiation and/or proliferation. Involved in gene regulation specifically in the gastric epithelium. Involved in bone morphogenetic protein (BMP)-mediated cardiac-specific gene expression. Binds to BMP response element (BMPRE) DNA sequences within cardiac activating regions (By similarity).

Gene Wiki entry for GATA6 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GATA6 Gene

Genomics for GATA6 Gene

Regulatory Elements for GATA6 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for GATA6 Gene

Start:
22,169,443 bp from pter
End:
22,202,528 bp from pter
Size:
33,086 bases
Orientation:
Plus strand

Genomic View for GATA6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GATA6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GATA6 Gene

Proteins for GATA6 Gene

  • Protein details for GATA6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92908-GATA6_HUMAN
    Recommended name:
    Transcription factor GATA-6
    Protein Accession:
    Q92908
    Secondary Accessions:
    • B0YJ17
    • P78327

    Protein attributes for GATA6 Gene

    Size:
    595 amino acids
    Molecular mass:
    60033 Da
    Quaternary structure:
    • Interacts with LMCD1.

    Alternative splice isoforms for GATA6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GATA6 Gene

Proteomics data for GATA6 Gene at MOPED

Post-translational modifications for GATA6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GATA6 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for GATA6 (GATA6)

No data available for DME Specific Peptides for GATA6 Gene

Domains for GATA6 Gene

Gene Families for GATA6 Gene

HGNC:
  • GATAD :GATA zinc finger domain containing

Suggested Antigen Peptide Sequences for GATA6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q92908

UniProtKB/Swiss-Prot:

GATA6_HUMAN :
  • Q92908
Domain:
  • The GATA-type zinc fingers mediate interaction with LMCD1.
Similarity:
  • Contains 2 GATA-type zinc fingers.
genes like me logo Genes that share domains with GATA6: view

Function for GATA6 Gene

Molecular function for GATA6 Gene

GENATLAS Biochemistry:
regulatory transcriptional factor,GATA binding protein expressed in the developing heart,lung,gastrointestinal and gut derived tissues,not in the testis
UniProtKB/Swiss-Prot Function:
Transcriptional activator that regulates SEMA3C and PLXNA2. Thought to be important for regulating terminal differentiation and/or proliferation. Involved in gene regulation specifically in the gastric epithelium. Involved in bone morphogenetic protein (BMP)-mediated cardiac-specific gene expression. Binds to BMP response element (BMPRE) DNA sequences within cardiac activating regions (By similarity).

Gene Ontology (GO) - Molecular Function for GATA6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEA --
GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity IMP 21127043
GO:0001103 RNA polymerase II repressing transcription factor binding IEA --
GO:0003677 DNA binding --
GO:0003682 chromatin binding IEA --
genes like me logo Genes that share ontologies with GATA6: view
genes like me logo Genes that share phenotypes with GATA6: view

Animal Models for GATA6 Gene

MGI Knock Outs for GATA6:

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GATA6

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for GATA6 Gene

Localization for GATA6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GATA6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GATA6 Gene COMPARTMENTS Subcellular localization image for GATA6 gene
Compartment Confidence
nucleus 5
cytoskeleton 1
extracellular 1

Gene Ontology (GO) - Cellular Components for GATA6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 17785913
GO:0005654 nucleoplasm TAS --
GO:0005667 transcription factor complex IEA --
genes like me logo Genes that share ontologies with GATA6: view

Pathways for GATA6 Gene

genes like me logo Genes that share pathways with GATA6: view

Pathways by source for GATA6 Gene

PCR Array Products

Gene Ontology (GO) - Biological Process for GATA6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IDA 18177748
GO:0001701 in utero embryonic development IEA --
GO:0001889 liver development IEA --
GO:0003148 outflow tract septum morphogenesis IMP 19666519
GO:0003309 type B pancreatic cell differentiation IEA --
genes like me logo Genes that share ontologies with GATA6: view

Compounds for GATA6 Gene

(9) Novoseek inferred chemical compound relationships for GATA6 Gene

Compound -log(P) Hits PubMed IDs
5-aza-2deoxycytidine 46.6 2
zinc 39.1 11
retinoic acid 35.3 2
dehydroepiandrosterone sulfate 33.6 1
steroid 29.2 2
genes like me logo Genes that share compounds with GATA6: view

Transcripts for GATA6 Gene

mRNA/cDNA for GATA6 Gene

Unigene Clusters for GATA6 Gene

GATA binding protein 6:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GATA6

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GATA6 Gene

No ASD Table

Relevant External Links for GATA6 Gene

GeneLoc Exon Structure for
GATA6
ECgene alternative splicing isoforms for
GATA6

Expression for GATA6 Gene

mRNA expression in normal human tissues for GATA6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GATA6 Gene

This gene is overexpressed in Ovary (6.7), Adrenal Gland (4.7), and Heart - Left Ventricle (4.3).

Protein differential expression in normal tissues for GATA6 Gene

This gene is overexpressed in Urine (46.2) and Pancreatic juice (12.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for GATA6 Gene

SOURCE GeneReport for Unigene cluster for GATA6 Gene Hs.514746

mRNA Expression by UniProt/SwissProt for GATA6 Gene

Q92908-GATA6_HUMAN
Tissue specificity: Expressed in heart, gut and gut-derived tissues
genes like me logo Genes that share expressions with GATA6: view

In Situ Assay Products

No data available for Expression partners for GATA6 Gene

Orthologs for GATA6 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for GATA6 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia GATA6 35
  • 89.91 (n)
  • 91.67 (a)
GATA6 36
  • 72 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gata6 35
  • 85 (n)
  • 88.12 (a)
Gata6 16
Gata6 36
  • 90 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GATA6 35
  • 99.08 (n)
  • 98.94 (a)
GATA6 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gata6 35
  • 85.03 (n)
  • 90.93 (a)
cow
(Bos Taurus)
Mammalia GATA6 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia GATA6 36
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GATA6 36
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves GATA6 36
  • 88 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GATA6 36
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gata6 35
  • 66.14 (n)
  • 64.49 (a)
pnr 35
African clawed frog
(Xenopus laevis)
Amphibia gata-6 35
zebrafish
(Danio rerio)
Actinopterygii gata6 35
  • 64.2 (n)
  • 61.11 (a)
gata6 36
  • 55 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta grn 37
  • 74 (a)
pnr 37
  • 78 (a)
pnr 36
  • 28 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea elt-1 37
  • 69 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GZF3 38
Species with no ortholog for GATA6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GATA6 Gene

ENSEMBL:
Gene Tree for GATA6 (if available)
TreeFam:
Gene Tree for GATA6 (if available)

Paralogs for GATA6 Gene

Paralogs for GATA6 Gene

Selected SIMAP similar genes for GATA6 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with GATA6: view

Variants for GATA6 Gene

Sequence variations from dbSNP and Humsavar for GATA6 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs919049 -- 22,197,319(+) AGTGC(A/T)GGGAT intron-variant
rs1298424 -- 22,184,262(-) GAATT(G/T)GGGTA intron-variant
rs1298805 -- 22,184,293(-) CGTTT(G/T)GTTTC intron-variant
rs1469284 -- 22,189,426(-) CCCCC(G/T)GCACT intron-variant
rs1941083 -- 22,200,900(-) CTGTC(C/T)GGACC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for GATA6 Gene

Variant ID Type Subtype PubMed ID
nsv833596 CNV Loss 17160897

Relevant External Links for GATA6 Gene

HapMap Linkage Disequilibrium report
GATA6
Human Gene Mutation Database (HGMD)
GATA6

PCR Panel Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GATA6 Gene

Disorders for GATA6 Gene

(5) OMIM Diseases for GATA6 Gene (601656)

UniProtKB/Swiss-Prot

GATA6_HUMAN
  • Conotruncal heart malformations (CTHM) [MIM:217095]: A group of congenital heart defects involving the outflow tracts. Examples include truncus arteriosus communis, double-outlet right ventricle and transposition of great arteries. Truncus arteriosus communis is characterized by a single outflow tract instead of a separate aorta and pulmonary artery. In transposition of the great arteries, the aorta arises from the right ventricle and the pulmonary artery from the left ventricle. In double outlet of the right ventricle, both the pulmonary artery and aorta arise from the right ventricle. {ECO:0000269 PubMed:19666519}. Note=The disease is caused by mutations affecting the gene represented in this entry. GATA6 mutations have been found in patients with non-syndromic persistent truncus arteriosus (PubMed:19666519). {ECO:0000269 PubMed:19666519}.
  • Atrial septal defect 9 (ASD9) [MIM:614475]: A congenital heart malformation characterized by incomplete closure of the wall between the atria resulting in blood flow from the left to the right atria. Some patients manifest tricuspid valve disease, pulmonary valve disease, and pulmonary artery hypertension. {ECO:0000269 PubMed:20631719}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Tetralogy of Fallot (TOF) [MIM:187500]: A congenital heart anomaly which consists of pulmonary stenosis, ventricular septal defect, dextroposition of the aorta (aorta is on the right side instead of the left) and hypertrophy of the right ventricle. In this condition, blood from both ventricles (oxygen-rich and oxygen-poor) is pumped into the body often causing cyanosis. {ECO:0000269 PubMed:20581743, ECO:0000269 PubMed:20631719}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Atrioventricular septal defect 5 (AVSD5) [MIM:614474]: A congenital heart malformation characterized by a common atrioventricular junction coexisting with deficient atrioventricular septation. The complete form involves underdevelopment of the lower part of the atrial septum and the upper part of the ventricular septum; the valve itself is also shared. A less severe form, known as ostium primum atrial septal defect, is characterized by separate atrioventricular valvar orifices despite a common junction. {ECO:0000269 PubMed:20581743}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Pancreatic agenesis and congenital heart defects (PACHD) [MIM:600001]: An autosomal dominant disease characterized by pancreatic severe hypoplasia or agenesis, diabetes mellitus, and congenital heart abnormalities including ventricular septal defect, patent ductus arteriosus, pulmonary artery stenosis, truncus arteriosus and tetralogy of Fallot. {ECO:0000269 PubMed:22158542}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for GATA6 Gene

(13) Novoseek inferred disease relationships for GATA6 Gene

Disease -log(P) Hits PubMed IDs
adrenal tumor 59.5 4
carcinoma adrenocortical 56.4 4
yolk sac tumor 49.6 2
polycystic ovary syndrome 43.9 1
carcinoma 25.3 8

Relevant External Links for GATA6

Genetic Association Database (GAD)
GATA6
Human Genome Epidemiology (HuGE) Navigator
GATA6
genes like me logo Genes that share disorders with GATA6: view

No data available for Genatlas for GATA6 Gene

Publications for GATA6 Gene

  1. The human GATA-6 gene: structure, chromosomal location, and regulation of expression by tissue-specific and mitogen-responsive signals. (PMID: 8975704) Suzuki E. … Walsh K. (Genomics 1996) 2 3 4 23
  2. Molecular cloning of human GATA-6 DNA binding protein: high levels of expression in heart and gut. (PMID: 9294001) Huggon I.C. … Towner P. (Biochim. Biophys. Acta 1997) 3 4 23
  3. GATA-6 DNA binding protein expressed in human gastric adenocarcinoma MKN45 cells. (PMID: 9315713) Yoshida T. … Maeda M. (FEBS Lett. 1997) 3 4 23
  4. The human and mouse GATA-6 genes utilize two promoters and two initiation codons. (PMID: 10608869) Brewer A. … Patient R. (J. Biol. Chem. 1999) 3 4 23
  5. Polymorphism in HSD17B6 is associated with key features of polycystic ovary syndrome. (PMID: 17070195) Jones M.R. … Stuckey B.G. (Fertil. Steril. 2006) 3 23 48

Products for GATA6 Gene

Sources for GATA6 Gene

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