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Aliases & Descriptions for GATA3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases HDR 1 , 2 , 5 MGC2346 2 MGC5199 2 MGC5445 2 OTTHUMP00000019070 2 OTTHUMP00000019071 2
Descriptions GATA binding protein 3 2 GATA-binding factor 3 3 GATA-binding protein 3 1 , 2
Search outside databases for aliases for GATA3 genePrevious GC identifers: GC10P008040 GC10P008246 GC10P008100
Summaries for GATA3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: GATA3_HUMAN, P23771 Function : Transcriptional activator which binds to the enhancer of the T-cell receptor alpha anddelta genes. Binds to the consensus sequence 5'-AGATAG-3'
Gene Wiki entry for GATA3
Genomic Location for GATA3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GATA3 gene Entrez Gene cytogenetic band: 10p15 Ensembl cytogenetic band: 10p14 HGNC cytogenetic band: 10p15 GATA3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P008136:
(about GC identifiers )
Start:
8,136,673 bp from pter
End:
8,157,170 bp from pter
Size:
20,498 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.9 NT_077569.2 Proteins for GATA3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GATA3_HUMAN, P23771 (See
protein sequence )Recommended Name: Trans-acting T-cell-specific transcription factor GATA-3 Size : 443 amino acids; 47916 Da
Subcellular location : Nucleus
Secondary accessions : Q96J16Alternative splicing : 2 isoforms : P23771-1 P23771-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001002295.1 NP_002042.1 ENSEMBL proteins: ENSP00000341619 ENSP00000368632 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): GATA3 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
About this table Antibodies for GATA3: Assays for GATA3:
Protein
Domains/ Families for GATA3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P23771 ProtoNet protein and cluster: P23771
1 Blocks protein family : IPB000679 Zn-finger UniProtKB/Swiss-Prot: GATA3_HUMAN, P23771 Similarity : Contains 2 GATA-type zinc fingers
Gene Function for GATA3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): BC006793 Applied Biosystems Silencer ® siRNAs for GATA3 Sigma-Aldrich siRNA for GATA3 Sigma-Aldrich shRNA Panels and shRNA for GATA3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001002295                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001002295                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001002295  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001002295 UniProtKB/Swiss-Prot: GATA3_HUMAN, P23771 Function : Transcriptional activator which binds to the enhancer of the T-cell receptor alpha anddelta genes. Binds to the consensus sequence 5'-AGATAG-3'
Genatlas biochemistry entry for GATA3 :T cell specific transcription factor,GATA sequence binding protein in T cell receptor,alsoexpressed in endothelial cell,placenta,transcriptional regulator in kidney,adrenal gland,embryonicbrain,adult nervous system endocardium,associated with a special class of nuclear bodies
15/21 MGI mutant phenotypes (inferred from 11 alleles ) (MGI details for Gata3) (see all 21
):5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for GATA3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for GATA3 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for GATA3 5/86 Interacting proteins for GATA3 (ENSP00000368632 3 ) via UniProtKB, MINT, and/or STRING (see all 86
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
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Drugs & Compounds for GATA3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for GATA3 10 Novoseek chemical compound relationships for GATA3 gene
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Transcripts for GATA3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): BC006793 Sigma-Aldrich siRNA for GATA3 Sigma-Aldrich shRNA Panels and shRNA for GATA3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001002295 NM_002051
REFSEQ mRNAs for GATA3 gene (2 alternative transcripts): NM_001002295.1 NM_002051.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001002295 NM_002051
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001002295                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001002295                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001002295  
Additional cDNA sequence: AK298213.1 BC003070.2 BC006793.1 BC006839.1 M69106.1 X55037.1 X55122.1 X58072.1
7 DOTS entries : DT.448323 DT.91733280 DT.121225701 DT.97794782 DT.91930736 DT.100776576 DT.91733248
24/166 AceView cDNA sequences (see all 166
):H88809 BF594726 BG285517 AA359752 BG619327 BQ068878 BM706223 NM_002051 CB145787 AI972378 BQ882897 NM_001002295 BP429648 AA384707 AA384739 BC003070 AA312327 AI307323 AI686327 BE084816 AA600879 BM785293 BG683464 BQ072011
highest scoring ESTs for GATA3 :X58072 AA025379 AA025380 AA319161 AA319742 AA355987 AA384707 AA384739 AA418167 AA600879
Unigene Cluster for GATA3: GATA binding protein 3 Hs.524134 [show with all ESTs ] Unigene Representative Sequence: NM_001002295 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for GATA3 ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b SP1 :                 SP2 :                 SP3 :         -        
About this scheme ECgene alternative splicing isoforms for GATA3 2 Ensembl transcripts including schematic representations : ENST00000346208
ENST00000379328
Expression for GATA3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GATA3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GATA3 1 / 2 / 3
7 probe-sets matching GATA3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAGGATGCCASOURCE GeneReport for Unigene cluster: Hs.524134 Expression variation in blood from EXPOLDB for GATA3
UniProtKB/Swiss-Prot: GATA3_HUMAN, P23771 Tissue specificity : T-cells and endothelial cells
Orthologs for GATA3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GATA3 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for GATA3 ENSEMBL Gene Tree for GATA3 Paralogs for GATA3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GATA3 gene GATA4 2 GATA2 2 GATA1 2
SNPs/Variants for GATA3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GATA3 (up to first 250kb)
Disorders & Mutations for GATA3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 131320 disorders : 146255 UniProtKB/Swiss-Prot: GATA3_HUMAN, P23771
Defects in GATA3 are the cause of hypoparathyroidism with sensorineural deafness and renaldysplasia (HDR) [MIM:146255]; also known as Barakat syndrome
10/29 Novoseek disease relationships for GATA3 gene (see all 29
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
hypoparathyroidism
68.63
19
16912130 (4), 15705923 (2), 17210674 (2), 19057839 (2) (see all 9 )
renal dysplasia
61.00
5
15705923 (2), 19248180 (1), 19022243 (1)
renal anomaly
58.89
2
16509533 (1), 16319112 (1)
deafness sensorineural
58.58
3
16509533 (1), 19022243 (1)
asthma allergic
52.49
2
9949310 (1), 11295643 (1)
allergic rhinitis
43.77
24
19452711 (6), 18260379 (5), 15563083 (5), 10856149 (2) (see all 7 )
asthma
40.07
16
11295643 (3), 16489117 (2), 12900517 (1), 15853749 (1) (see all 11 )
lupus nephritis
34.87
1
16461436 (1)
inflammation
28.80
8
18691059 (2), 15907913 (1), 19124555 (1), 19436703 (1) (see all 6 )
dermatitis atopic
27.76
6
18410415 (4), 15008986 (2)
About this table Human Gene Mutation Database : GATA3 Genetic Association Database: GATA3 Human Genome Epidemiology Navigator: GATA3 (18 documents)
Medical News for GATA3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GATA3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/291 PubMed articles for GATA3 gene (see all 291
): A T-cell specific TCR delta DNA binding protein is a member of the human GATA family. (PubMed id 2050118) 2, 3, 4 Joulin V.... Romeo P.-H. (1991) Essential role of GATA3 for the maintenance of type 2 helper T (Th2) cytokine production and chromatin remodeling at the Th2 cytokine gene loci. (PubMed id 15087456) 1, 2, 3 Yamashita M....Nakayama T. (2004) GATA3 haplo-insufficiency causes human HDR syndrome. (PubMed id 10935639) 1, 3, 4 Van Esch H.... Devriendt K. (2000) Association analysis of common variants of STAT6, GATA3, and STAT4 to asthma and high serum IgE phenotypes. (PubMed id 15637551) 3, 6 Pykalainen M....Lahesmaa R. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) GATA3 abnormalities and the phenotypic spectrum of HDR syndrome. (PubMed id 11389161) 3, 4 Muroya K....Ogata T. (2001) Murine and human T-lymphocyte GATA-3 factors mediate transcription through a cis-regulatory element within the human T-cell receptor delta gene enhancer. (PubMed id 2017177) 3, 4 Ko L.J.... Engel J.D. (1991) Human GATA-3: a lineage-restricted transcription factor that regulates the expression of the T cell receptor alpha gene. (PubMed id 1827068) 3, 4 Ho I.-C....Leiden J.M. (1991) The human enhancer-binding protein Gata3 binds to several T-cell receptor regulatory elements. (PubMed id 1871134) 3, 4 Marine J. and Winoto A. (1991) GATA-3 expression in breast cancer has a strong association with estrogen receptor but lacks independent prognostic value. (PubMed id 18268121) 1, 3 Voduc D....Nielsen T. (2008)
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Genome Databases showing GATA3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GATA3
(According to HUGE )
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Specialized Databases showing GATA3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for GATA3 Genetics and Cytogenetics in Oncology and Haematology GeneReviews http://www.genetests.org/query?gene=GATA3 SeattleSNPs http://pga.gs.washington.edu/data/gata3/
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-- Services for GATA3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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