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Aliases for GATA2 Gene

Aliases for GATA2 Gene

  • GATA Binding Protein 2 2 3
  • GATA-Binding Protein 2 2 4
  • MONOMAC 3 6
  • IMD21 3 6
  • DCML 3 6
  • Endothelial Transcription Factor GATA-2 3
  • NFE1B 3

External Ids for GATA2 Gene

Previous GeneCards Identifiers for GATA2 Gene

  • GC03U990039
  • GC03M129481
  • GC03M129519
  • GC03M129680
  • GC03M128198
  • GC03M125582

Summaries for GATA2 Gene

Entrez Gene Summary for GATA2 Gene

  • This gene encodes a member of the GATA family of zinc-finger transcription factors that are named for the consensus nucleotide sequence they bind in the promoter regions of target genes. The encoded protein plays an essential role in regulating transcription of genes involved in the development and proliferation of hematopoietic and endocrine cell lineages. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Mar 2009]

GeneCards Summary for GATA2 Gene

GATA2 (GATA Binding Protein 2) is a Protein Coding gene. Diseases associated with GATA2 include immunodeficiency 21 and emberger syndrome. Among its related pathways are Hemostasis and G-AlphaQ Signaling. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and transcription factor binding. An important paralog of this gene is GATA5.

UniProtKB/Swiss-Prot for GATA2 Gene

  • Transcriptional activator which regulates endothelin-1 gene expression in endothelial cells. Binds to the consensus sequence 5-AGATAG-3

Gene Wiki entry for GATA2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GATA2 Gene

Genomics for GATA2 Gene

Regulatory Elements for GATA2 Gene

Transcription factor binding sites by QIAGEN in the GATA2 gene promoter:

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for GATA2 Gene

Start:
128,479,422 bp from pter
End:
128,493,187 bp from pter
Size:
13,766 bases
Orientation:
Minus strand

Genomic View for GATA2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GATA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GATA2 Gene

Proteins for GATA2 Gene

  • Protein details for GATA2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P23769-GATA2_HUMAN
    Recommended name:
    Endothelial transcription factor GATA-2
    Protein Accession:
    P23769
    Secondary Accessions:
    • D3DNB3
    • Q53YE0
    • Q96BH0
    • Q96BH8
    • Q9BUJ6

    Protein attributes for GATA2 Gene

    Size:
    480 amino acids
    Molecular mass:
    50500 Da
    Quaternary structure:
    • Interacts with BRD3.
    SequenceCaution:
    • Sequence=AAA35869.1; Type=Miscellaneous discrepancy; Note=Several sequencing errors.; Evidence={ECO:0000305};

    Alternative splice isoforms for GATA2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GATA2 Gene

Proteomics data for GATA2 Gene at MOPED

Post-translational modifications for GATA2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GATA2 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for GATA2 (GATA2)

No data available for DME Specific Peptides for GATA2 Gene

Domains for GATA2 Gene

Gene Families for GATA2 Gene

HGNC:
  • GATAD :GATA zinc finger domain containing

Protein Domains for GATA2 Gene

Suggested Antigen Peptide Sequences for GATA2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P23769

UniProtKB/Swiss-Prot:

GATA2_HUMAN :
  • P23769
Similarity:
  • Contains 2 GATA-type zinc fingers.
genes like me logo Genes that share domains with GATA2: view

Function for GATA2 Gene

Molecular function for GATA2 Gene

GENATLAS Biochemistry: endothelial cell transcription factor,GATA sequence binding protein,expressed in immature RBC,mast cell,megakaryocyte,hematopoietic progenitor cell,endothelial cell,embryonic brain,associated with a special class of nuclear bodies. Regulating endothelin 1 (EDN1) expression. Activated by calcineurin (IGF1 induced) to promote myocyte hypertrophy
UniProtKB/Swiss-Prot Function: Transcriptional activator which regulates endothelin-1 gene expression in endothelial cells. Binds to the consensus sequence 5-AGATAG-3

Gene Ontology (GO) - Molecular Function for GATA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA --
GO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription IEA --
GO:0001158 enhancer sequence-specific DNA binding IDA 19323994
GO:0003677 DNA binding --
GO:0003682 chromatin binding IDA 19242469
genes like me logo Genes that share ontologies with GATA2: view
genes like me logo Genes that share phenotypes with GATA2: view

Animal Models for GATA2 Gene

MGI Knock Outs for GATA2:

Animal Model Products

CRISPR Products

miRNA for GATA2 Gene

miRTarBase miRNAs that target GATA2
Targeting motifs for GATA2 Gene
HOMER Transcription Factor Regulatory Elements motif GATA2
  • Consensus sequence: NCCTTATCTC Submotif: canonical Cell Type: K562 GeoId: GSE18829

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GATA2

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) and Transcription Factor Targeting for GATA2 Gene

Localization for GATA2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GATA2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GATA2 Gene COMPARTMENTS Subcellular localization image for GATA2 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for GATA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm TAS --
GO:0043234 protein complex IEA --
genes like me logo Genes that share ontologies with GATA2: view

Pathways for GATA2 Gene

genes like me logo Genes that share pathways with GATA2: view

Pathways by source for GATA2 Gene

PCR Array Products

Gene Ontology (GO) - Biological Process for GATA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA --
GO:0001655 urogenital system development IEA --
GO:0001709 cell fate determination IEA --
GO:0001892 embryonic placenta development IEA --
GO:0006351 transcription, DNA-templated IDA 16153155
genes like me logo Genes that share ontologies with GATA2: view

Compounds for GATA2 Gene

(13) Novoseek inferred chemical compound relationships for GATA2 Gene

Compound -log(P) Hits PubMed IDs
zinc 40.7 15
methylcellulose 38.4 1
benzidine 37.7 1
retinoic acid 27.6 9
butyrate 22.5 5
genes like me logo Genes that share compounds with GATA2: view

Transcripts for GATA2 Gene

Unigene Clusters for GATA2 Gene

GATA binding protein 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GATA2

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GATA2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b
SP1: - - - - -
SP2: - - -
SP3: - -
SP4:
SP5: -
SP6:

Relevant External Links for GATA2 Gene

GeneLoc Exon Structure for
GATA2
ECgene alternative splicing isoforms for
GATA2

Expression for GATA2 Gene

mRNA expression in normal human tissues for GATA2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GATA2 Gene

This gene is overexpressed in Fallopian Tube (5.1), Prostate (4.3), Bladder (4.2), and Uterus (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for GATA2 Gene

SOURCE GeneReport for Unigene cluster for GATA2 Gene Hs.367725

mRNA Expression by UniProt/SwissProt for GATA2 Gene

P23769-GATA2_HUMAN
Tissue specificity: Endothelial cells
genes like me logo Genes that share expressions with GATA2: view

In Situ Assay Products

Orthologs for GATA2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for GATA2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GATA2 35
  • 99.72 (n)
  • 100 (a)
GATA2 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia GATA2 35
  • 89.35 (n)
  • 95.82 (a)
GATA2 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GATA2 35
  • 92.5 (n)
  • 98.54 (a)
GATA2 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gata2 35
  • 90.07 (n)
  • 97.92 (a)
Gata2 16
Gata2 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia GATA2 36
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GATA2 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gata2 35
  • 90.56 (n)
  • 97.5 (a)
chicken
(Gallus gallus)
Aves GATA2 35
  • 78.76 (n)
  • 87.77 (a)
GATA2 36
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GATA2 36
  • 74 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.792 35
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100487142 35
  • 77.31 (n)
  • 86.7 (a)
Str.17047 35
zebrafish
(Danio rerio)
Actinopterygii gata2 35
gata2a 35
  • 72.5 (n)
  • 75.91 (a)
gata2a 36
  • 75 (a)
OneToMany
gata2b 36
  • 60 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta grn 36
  • 27 (a)
OneToMany
grn 37
  • 84 (a)
pnr 37
  • 64 (a)
worm
(Caenorhabditis elegans)
Secernentea elt-1 36
  • 27 (a)
OneToMany
elt-1 37
  • 67 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes DAL80 36
  • 17 (a)
ManyToMany
GAT1 36
  • 15 (a)
ManyToMany
GLN3 36
  • 13 (a)
ManyToMany
GZF3 36
  • 13 (a)
ManyToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.9192 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 38 (a)
OneToMany
Species with no ortholog for GATA2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GATA2 Gene

ENSEMBL:
Gene Tree for GATA2 (if available)
TreeFam:
Gene Tree for GATA2 (if available)

Paralogs for GATA2 Gene

Paralogs for GATA2 Gene

Selected SIMAP similar genes for GATA2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with GATA2: view

Variants for GATA2 Gene

Sequence variations from dbSNP and Humsavar for GATA2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs3803 -- 128,480,537(-) TTCTC(C/T)TCTGG utr-variant-3-prime
rs1126559 -- 128,481,144(-) CACCT(A/G)TGGGC missense, reference
rs1126560 -- 128,481,022(-) ATGGG(C/G)TAGGG reference, synonymous-codon
rs1126561 -- 128,481,010(-) ACAGA(C/T)GGACG utr-variant-3-prime
rs1126562 -- 128,480,977(-) ATGGG(C/T)GGACC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for GATA2 Gene

Variant ID Type Subtype PubMed ID
dgv1493e1 CNV Complex 17122850
dgv1494e1 CNV Complex 17122850
nsv508240 CNV Loss 20534489
dgv5250n71 CNV Loss 21882294
nsv516926 CNV Loss 19592680
nsv877464 CNV Loss 21882294
nsv508241 CNV Loss 20534489
nsv10318 CNV Gain 18304495
esv2657669 CNV Deletion 23128226

Relevant External Links for GATA2 Gene

HapMap Linkage Disequilibrium report
GATA2
Human Gene Mutation Database (HGMD)
GATA2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GATA2 Gene

Disorders for GATA2 Gene

(4) OMIM Diseases for GATA2 Gene (137295)

UniProtKB/Swiss-Prot

GATA2_HUMAN
  • Immunodeficiency 21 (IMD21) [MIM:614172]: An immunodeficiency disease characterized by profoundly decreased or absent monocytes, B-lymphocytes, natural killer lymphocytes, and circulating and tissue dendritic cells, with little or no effect on T-cell numbers. Clinical features of DCML include susceptibility to disseminated non-tuberculous mycobacterial infections, papillomavirus infections, opportunistic fungal infections, and pulmonary alveolar proteinosis. Bone marrow hypocellularity and dysplasia of myeloid, erythroid, and megakaryocytic lineages are present in most patients, as are karyotypic abnormalities, including monosomy 7 and trisomy 8. This syndrome links susceptibility to mycobacterial, viral, and fungal infections with malignancy and can be transmitted in an autosomal dominant pattern. {ECO:0000269 PubMed:21670465}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Lymphedema, primary, with myelodysplasia (LMPM) [MIM:614038]: A chronic disabling condition characterized by swelling of the extremities due to altered lymphatic flow, associated with myelodysplasia. Patients with lymphedema suffer from recurrent local infections, and physical impairment. {ECO:0000269 PubMed:21892158}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Myelodysplastic syndrome (MDS) [MIM:614286]: A heterogeneous group of closely related clonal hematopoietic disorders. All are characterized by a hypercellular or hypocellular bone marrow with impaired morphology and maturation, dysplasia of the myeloid, megakaryocytic and/or erythroid lineages, and peripheral blood cytopenias resulting from ineffective blood cell production. Included diseases are: refractory anemia (RA), refractory anemia with ringed sideroblasts (RARS), refractory anemia with excess blasts (RAEB), refractory cytopenia with multilineage dysplasia and ringed sideroblasts (RCMD-RS); chronic myelomonocytic leukemia (CMML) is a myelodysplastic/myeloproliferative disease. MDS is considered a premalignant condition in a subgroup of patients that often progresses to acute myeloid leukemia (AML). {ECO:0000269 PubMed:21892162}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for GATA2 Gene

(20) Novoseek inferred disease relationships for GATA2 Gene

Disease -log(P) Hits PubMed IDs
blast crisis 55 3
myeloid leukemia 49.4 2
acute leukemia 44.3 10
myeloid leukemia chronic 40.3 5
leukemia 37.4 13

Relevant External Links for GATA2

Genetic Association Database (GAD)
GATA2
Human Genome Epidemiology (HuGE) Navigator
GATA2
genes like me logo Genes that share disorders with GATA2: view

Publications for GATA2 Gene

  1. Cloning of the GATA-binding protein that regulates endothelin-1 gene expression in endothelial cells. (PMID: 1714909) Lee M.-E. … Quertermous T. (J. Biol. Chem. 1991) 2 3 4 23
  2. GATA-2 L359 V mutation is exclusively associated with CML progression but not other hematological malignancies and GATA-2 P250A is a novel single nucleotide polymorphism. (PMID: 19304323) Zhang S.J. … Li J.Y. (Leuk. Res. 2009) 3 23 48
  3. Human transcription factor GATA-2. Evidence for regulation of preproendothelin-1 gene expression in endothelial cells. (PMID: 1370462) Dorfman D.M. … Orkin S.H. (J. Biol. Chem. 1992) 3 4 23
  4. Association study of GATA-2 transcription factor gene (GATA2) polymorphism and Parkinson's disease. (PMID: 19864173) Kurzawski M. … DroA_dzik M. (Parkinsonism Relat. Disord. 2010) 3 23 48
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4

Products for GATA2 Gene

  • Addgene plasmids for GATA2

Sources for GATA2 Gene

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