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Aliases & Descriptions for GATA2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ45948 2 MGC2306 2 NFE1B 1 , 2
Descriptions GATA binding protein 2 2 GATA-binding protein 2 1 , 2 , 3 endothelial transcription factor GATA-2 2
Search outside databases for aliases for GATA2 genePrevious GC identifers: GC03U990039 GC03M129481 GC03M129519
Summaries for GATA2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GATA2 : This gene encodes a member of the GATA family of zinc-finger transcription factors that are namedfor the consensus nucleotide sequence they bind in the promoter regions of target genes. Theencoded protein plays an essential role in regulating transcription of genes involved in thedevelopment and proliferation of hematopoietic and endocrine cell lineages. Alternative splicingresults in multiple transcript variants. UniProtKB/Swiss-Prot: GATA2_HUMAN, P23769 Function : Transcriptional activator which regulates endothelin-1 gene expression in endothelialcells. Binds to the consensus sequence 5'-AGATAG-3'
Gene Wiki entry for GATA2
Genomic Location for GATA2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GATA2 gene Entrez Gene cytogenetic band: 3q21.3 Ensembl cytogenetic band: 3q21.3 HGNC cytogenetic band: 3q21 GATA2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M129680:
(about GC identifiers )
Start:
129,680,960 bp from pter
End:
129,694,718 bp from pter
Size:
13,759 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000003.10 NT_005612.15 Proteins for GATA2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GATA2_HUMAN, P23769 (See
protein sequence )Recommended Name: Endothelial transcription factor GATA-2 Size : 480 amino acids; 50500 Da
Subcellular location : Nucleus
Sequence caution : Sequence=AAA35869.1; Type=Miscellaneous discrepancy; Note=Several sequencingerrors;
Secondary accessions : Q96BH0 Q9BUJ6
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001139133.1 NP_001139134.1 NP_116027.2 ENSEMBL proteins: ENSP00000345681 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: GATA2 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for GATA2: Assays for GATA2:
Protein
Domains/ Families for GATA2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P23769 ProtoNet protein and cluster: P23769
1 Blocks protein family : IPB000679 Zn-finger UniProtKB/Swiss-Prot: GATA2_HUMAN, P23769 Similarity : Contains 2 GATA-type zinc fingers
Gene Function for GATA2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
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Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): BC015613 Applied Biosystems Silencer ® siRNAs for GATA2 Sigma-Aldrich siRNA for GATA2 Sigma-Aldrich shRNA for GATA2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001145661                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001145661                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC015613  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_032638 UniProtKB/Swiss-Prot: GATA2_HUMAN, P23769 Function : Transcriptional activator which regulates endothelin-1 gene expression in endothelialcells. Binds to the consensus sequence 5'-AGATAG-3'
Genatlas biochemistry entry for GATA2 :endothelial cell transcription factor,GATA sequence binding protein,expressed in immature RBC,mastcell,megakaryocyte,hematopoietic progenitor cell,endothelial cell,embryonic brain,associated witha special class of nuclear bodies. Regulating endothelin 1 (EDN1) expression. Activated bycalcineurin (IGF1 induced) to promote myocyte hypertrophy
14 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Gata2) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for GATA2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for GATA2 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for GATA2 5/77 Interacting proteins for GATA2 (ENSP00000345681 3 ) via UniProtKB, MINT, and/or STRING (see all 77
)About this table 5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
):
GO ID Qualified GO term Evidence PubMed IDs GO:0001709 cell fate determination
IEA -- GO:0001892 embryonic placenta development
IEA -- GO:0006350 transcription
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0010552 positive regulation of specific transcription from RNA polymerase II promoter
IDA 15016828
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Drugs & Compounds for GATA2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for GATA2 5 Novoseek chemical compound relationships for GATA2 gene
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Transcripts for GATA2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): BC015613 Sigma-Aldrich siRNA for GATA2 Sigma-Aldrich shRNA for GATA2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_032638
REFSEQ mRNAs for GATA2 gene (3 alternative transcripts): NM_001145661.1 NM_001145662.1 NM_032638.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_032638
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001145661                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001145661                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC015613  
Additional cDNA sequence: AK314826.1 BC002557.2 BC015577.2 BC015613.2 BC018988.2 BC051272.1 BC051342.1 BT006671.1 CR621712.1 M68891.1 M77810.1
12 DOTS entries : DT.308983 DT.100824493 DT.92330285 DT.100671217 DT.95083558 DT.100658371 DT.100824502 DT.120890052 DT.100824492 DT.120890094 DT.92413074 DT.120890059
24/180 AceView cDNA sequences (see all 180
):AI216622 BE348488 BQ026392 BQ022387 AI962483 BC002557 NM_032638 AI867420 CD672746 BC015613 CR621712 BE670978 BC051342 AI375813 CF144613 AI202702 BI819533 BE858858 BE671935 AI954657 BI494388 BM662402 BI195665 BX394055
highest scoring ESTs for GATA2 :AA843659 AW451201 BC002557 BC015613 BC051342 BE280815 BE410016 BE730817 BF206316 BF317089
Unigene Cluster for GATA2: GATA binding protein 2 Hs.367725 [show with all ESTs ] Unigene Representative Sequence: NM_001145661 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for GATA2 (see all 6
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b SP1 :     -   -   -             -       -       SP2 :                     -   -     -       SP3 :       -   -                         SP4 :                                 SP5 :                           -      
About this scheme ECgene alternative splicing isoforms for GATA2 1 Ensembl transcript including schematic representation : ENST00000341105
Expression for GATA2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GATA2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GATA2 1 / 2 / 3
10 probe-sets matching GATA2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GACAGTTGTTSOURCE GeneReport for Unigene cluster: Hs.367725 Expression variation in blood from EXPOLDB for GATA2
UniProtKB/Swiss-Prot: GATA2_HUMAN, P23769 Tissue specificity : Endothelial cells
Orthologs for GATA2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GATA2 gene from 5/14 species (see all 14
)
About this table Species with no ortholog for GATA2 ENSEMBL Gene Tree for GATA2 Paralogs for GATA2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GATA2 gene GATA4 2 GATA3 2 GATA1 2
SNPs/Variants for GATA2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GATA2 (up to first 250kb)
Disorders & Mutations for GATA2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 137295 10/19 Novoseek disease relationships for GATA2 gene (see all 19
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
blast crisis
56.60
3
7643449 (1), 7579412 (1), 18550858 (1)
myeloid leukemia
47.57
2
7519472 (1), 10873593 (1)
acute leukemia
43.65
9
8035609 (2), 7780155 (2), 7808006 (1), 14701703 (1) (see all 7 )
myeloid leukemia chronic
42.43
5
7643449 (1), 11877047 (1), 18250304 (1), 7579412 (1) (see all 5 )
lymphoblastic leukemia acute
38.10
3
7643449 (1), 11877047 (1), 7579412 (1)
leukemia
34.82
15
15748439 (5), 11877047 (3), 7579412 (2), 7643449 (1) (see all 5 )
leukemia promyelocytic acute
31.51
2
11877047 (1), 11964310 (1)
t-all
21.30
1
15369140 (1)
hematologic disorders
19.76
1
16960339 (1)
anemia aplastic
18.96
8
11328281 (4), 16960339 (2), 17654061 (1)
About this table Human Gene Mutation Database : GATA2 Human Genome Epidemiology Navigator: GATA2 (3 documents)
Medical News for GATA2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GATA2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/243 PubMed articles for GATA2 gene (see all 243
): Cloning of the GATA-binding protein that regulates endothelin-1 gene expression in endothelial cells. (PubMed id 1714909) 1, 2, 3, 4 Lee M.-E.... Quertermous T. (1991) Human transcription factor GATA-2. Evidence for regulation of preproendothelin-1 gene expression in endothelial cells. (PubMed id 1370462) 1, 3, 4 Dorfman D.M.... Orkin S.H. (1992) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) High GATA-2 expression inhibits human hematopoietic stem and progenitor cell function by effects on cell cycle. (PubMed id 19168794) 1, 3 Tipping A.J....Enver T. (2009) Functional regulation of GATA-2 by acetylation. (PubMed id 15001660) 1, 3 Hayakawa F....Saito H. (2004) Transcription factor GATA-2 is expressed in erythroid, early myeloid, and CD34+ human leukemia-derived cell lines. (PubMed id 7519472) 1, 3 Nagai T....Engel J.D. (1994) Hematopoietic transcription factor GATA-2 activates transcription from HIV-1 long terminal repeat. (PubMed id 9517987) 1, 3 Towatari M....Hamaguchi M. (1998) Cross talk between retinoic acid signaling and transcription factor GATA-2. (PubMed id 15254248) 1, 3 Tsuzuki S....Enver T. (2004) Histone deacetylase 3 associates with and represses the transcription factor GATA-2. (PubMed id 11567998) 1, 3 Ozawa Y....Saito H. (2001) Interactions of GATA-2 with the promyelocytic leukemia zinc finger (PLZF) protein, its homologue FAZF, and the t(11;17)-generated PLZF-retinoic acid receptor alpha oncoprotein. (PubMed id 11964310) 1, 3 Tsuzuki S. and Enver T. (2002)
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Genome Databases showing GATA2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Specialized Databases showing GATA2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for GATA2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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