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Aliases & Descriptions for GAPDH
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 1.2.1.12 3 | | G3PD 2 | | GAPD 2, 3, 5 | | MGC88685 2 | | OTTHUMP00000174431 2 | | OTTHUMP00000174432 2 |
| | | Descriptions |
|---|
| aging-associated gene 9 protein 2 | | glyceraldehyde 3-phosphate dehydrogenase 2 | | glyceraldehyde-3-phosphate dehydrogenase 2 |
|
| | Search outside databases for aliases for GAPDH gene |
Summaries for GAPDH(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for GAPDH: The product of this gene catalyzes an important energy-yielding step in carbohydrate metabolism, the reversible oxidative phosphorylation of glyceraldehyde-3-phosphate in the presence of inorganic phosphate and nicotinamide adenine dinucleotide (NAD). The enzyme exists as a tetramer of identical chains. Many pseudogenes similar to this locus are present in the human genome. [provided by RefSeq] UniProtKB/Swiss-Prot: G3P_HUMAN, P04406Function: Independent of its glycolytic activity it is also involved in membrane trafficking in the early secretory pathwayGene Wiki entry for GAPDH (Glyceraldehyde_3-phosphate_dehydrogenase) |
Genomic Location for GAPDH
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the GAPDH gene 
Entrez Gene cytogenetic band: 12p13 Ensembl cytogenetic band: 12p13.31 HGNC cytogenetic band: 12p13.31GAPDH Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12P006514:
(about GC identifiers)
Start:
|
6,513,918 bp from pter |
End:
|
6,517,797 bp from pter |
Size:
|
3,880 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000012.10 NT_009759.15
| Proteins for GAPDH
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: G3P_HUMAN, P04406 (See
protein sequence)Recommended Name: Glyceraldehyde-3-phosphate dehydrogenase Size: 335 amino acids; 36053 Da
Subunit: Homotetramer. Binds PRKCI
Subcellular location: Cytoplasm. Cytoplasm, perinuclear region. Membrane. Note=Postnuclear and Perinuclear regions
Sequence caution: Sequence=Ref.14; Type=Miscellaneous discrepancy; Note=Differs quite extensively;
PDB structures from and Proteopedia :1U8F (3D)
 1ZNQ (3D)
 2FEH (3D)
 3GPD (3D)
 
Secondary accessions: P00354Post-translational modifications:
Reversible S-nitrosylation of Cys-152 inhibits enzymatic activity and increases endogenous ADP-ribosylation, which inhibits the enzyme in a non-reversible manner. The latter modification is more likely to be a pathophysiological event associated with inhibition of gluconeogenesis (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002037.2
ENSEMBL proteins: ENSP00000380065 ENSP00000380067 ENSP00000380070 ENSP00000380068 ENSP00000229239 ENSP00000384819
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: GAPDH 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for GAPDH: Assays for GAPDH: | Protein
Domains/ Families for GAPDH(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P04406
ProtoNet protein and cluster: P04406 1 Blocks protein family: IPB000173 Glyceraldehyde 3-phosphate dehydrogenase
UniProtKB/Swiss-Prot: G3P_HUMAN, P04406Similarity: Belongs to the glyceraldehyde-3-phosphate dehydrogenase family | Gene Function for GAPDH
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002046
Applied Biosystems Silencer® siRNAs for GAPDH
Sigma-Aldrich siRNA and siRNA Panels for GAPDH  Sigma-Aldrich shRNA for GAPDH  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002046                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002046                                  untagged cDNA clones in CMV expression vector (see all 4): NM_002046 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002046
UniProtKB/Swiss-Prot: G3P_HUMAN, P04406Function: Independent of its glycolytic activity it is also involved in membrane trafficking in the early secretory pathwayCatalytic activity: D-glyceraldehyde 3-phosphate + phosphate + NAD(+) = 3-phospho-D-glyceroyl phosphate + NADHEnzyme Number (IUBMB): EC 1.2.1.12 9 MGI mutant phenotypes (inferred from 9 alleles ) (MGI details for Gapdh):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for GAPDH
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for GAPDH (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: G3P_HUMAN, P04406Pathway: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 1/5 Gene Network CentralTM Interacting Genes and Proteins Network for GAPDH 
5/169 Interacting proteins for GAPDH (ENSP000002292393 P044061, 2) via UniProtKB, MINT, and/or STRING (see all 169
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for GAPDH(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for GAPDH |
Browse Tocris compounds for GAPDH 10/51 Novoseek chemical compound relationships for GAPDH gene (see all 51
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| glyceraldehyde 3-phosphate |
98.93 |
2471 |
7534983 (7), 9264469 (7), 12882642 (5), 11371431 (4) (see all 99) |
| actb |
85.41 |
40 |
10378372 (3), 18191039 (2), 16777070 (2), 18317805 (2) (see all 24) |
| koningic acid |
82.22 |
40 |
8439569 (4), 2226438 (4), 15788719 (4), 7902582 (3) (see all 8) |
| 1,3-bisphosphoglycerate |
77.34 |
10 |
9308888 (2), 8075252 (1), 15950210 (1), 9369240 (1) (see all 7) |
| nad+ |
73.47 |
71 |
7639707 (5), 9354374 (4), 7540026 (3), 7531693 (3) (see all 35) |
| cgp-3466 |
68.79 |
1 |
10617673 (1) |
| 3-phosphoglycerate |
67.48 |
24 |
2390992 (2), 8075252 (2), 15564524 (2), 18416820 (1) (see all 14) |
| pssg |
62.49 |
1 |
12958160 (1) |
| nadh |
60.76 |
51 |
10391884 (6), 8912669 (4), 16444750 (3), 12893257 (2) (see all 29) |
| vtcs |
60.74 |
6 |
16473604 (1), 15485821 (1), 16452474 (1) |
About this table
|
Transcripts for GAPDH(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002046
Sigma-Aldrich siRNA and siRNA Panels for GAPDH  Sigma-Aldrich shRNA for GAPDH  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002046 REFSEQ mRNAs for GAPDH gene: NM_002046.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002046               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002046                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002046                                  untagged cDNA clones in CMV expression vector (see all 4): NM_002046  Additional cDNA sequence: AJ844645.1 CR594180.1 CR612987.1 CR615404.1 CR626004.1 M36164.1 24/308 DOTS entries (see all 308
): DT.97869929 DT.100749347 DT.95375100 DT.97869918 DT.100749258 DT.92476260 DT.102841638 DT.92475902 DT.95375081 DT.95375098 DT.100749097 DT.100865568 DT.87000287 DT.95326333 DT.100749022 DT.91832908 DT.100830267 DT.100749019 DT.100749379 DT.100749245 DT.95375056 DT.92476269 DT.100749358 DT.100749129 24/65 AceView cDNA sequences (see all 65
):CR616330 CR598463 CR626004 CR617884 M36164 CR611578 CR606107 CR615404 CR593979 CR609371 CR615270 CR609914 CR608307 CR591732 CR597244 CR590092 CR598400 CR594204 CR598048 CR600441 CR621806 CR601654 CR590910 CR622647
highest scoring ESTs for GAPDH:AB062273 AF261085 AI751648 AY007133 BC001601 BC004109 BC009081 BC013310 BC013852 BC020308 Unigene Clusters for GAPDH: Glyceraldehyde-3-phosphate dehydrogenase Hs.544577 [show with all ESTs], Hs.592355 [show with all ESTs], Hs.598320 [show with all ESTs]Unigene Representative Sequences: BF983396, XR_018331, BG403493
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for GAPDH (see all 7
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5a | · | 5b | · | 5c | ^ | 6a | · | 6b | · | 6c | · | 6d | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for GAPDH
6 Ensembl transcripts including schematic representations: ENST00000396856
ENST00000396858
ENST00000396861
ENST00000396859
ENST00000229239
ENST00000406765
|
Expression for GAPDH
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| GAPDH expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for GAPDH
1 / 2 / 3 7 probe-sets matching GAPDH gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene clusters: Hs.544577 Hs.592355 Hs.598320
Expression variation in blood from EXPOLDB for GAPDH |
Orthologs for GAPDH
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for GAPDH gene from 5/28 species (see all 28
)
About this table Species with no ortholog for GAPDH
ENSEMBL Gene Tree for GAPDH | Paralogs for GAPDH(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for GAPDH gene
- GAPDHS2
Pseudogenes
- 52 related pseudogenes
|
SNPs/Variants for GAPDH(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for GAPDH (up to first 250kb)
|
Disorders & Mutations for GAPDH
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 138400
10/91 Novoseek disease relationships for GAPDH gene (see all 91
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neurodegenerative diseases |
41.62 |
20 |
12428732 (3), 11208907 (3), 15822178 (2), 17613523 (1) (see all 12) |
| tumors |
35.90 |
82 |
17597534 (3), 10897012 (3), 18629778 (3), 19144146 (3) (see all 51) |
| huntington disease |
30.05 |
11 |
11208907 (4), 9779656 (2), 12428732 (1), 15486605 (1) (see all 7) |
| disseminated candidiasis |
29.75 |
1 |
10219595 (1) |
| hepatocellular carcinoma |
25.21 |
9 |
19144146 (2), 8666326 (2), 9472111 (1) |
| sleeping sickness |
23.73 |
6 |
7562915 (2), 7932587 (2), 9822549 (1) |
| shock |
23.37 |
25 |
12517784 (2), 15498039 (1), 12669348 (1), 17521179 (1) (see all 20) |
| alzheimers disease |
20.61 |
19 |
7891898 (2), 9779656 (2), 16186172 (2), 12503091 (2) (see all 14) |
| leukemia |
19.92 |
4 |
9794812 (2), 15854547 (1), 8834064 (1) |
| cancer |
19.88 |
31 |
19161537 (3), 15079082 (2), 18651557 (2), 16515701 (2) (see all 18) |
About this table
Genetic Association Database: GAPDH Human Genome Epidemiology Navigator: GAPDH (5 documents)
|
Medical News for GAPDH(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for GAPDH (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/780 PubMed articles for GAPDH gene (see all 780
):- Isolation and complete sequence of a functional human glyceraldehyde- 3-phosphate dehydrogenase gene. (PubMed id 3170585)2, 3, 4 Ercolani L.... Alexander M. (1988)
- Subcellular localization of human glyceraldehyde-3-phosphate dehydrogenase is independent of its glycolytic function. (PubMed id 12829261)1, 3, 4 Mazzola J.L. and Sirover M.A. (2003)
- Structural analysis of human liver glyceraldehyde-3-phosphate dehydrogenase. (PubMed id 16239728)1, 3, 4 Ismail S.A. and Park H.W. (2005)
- High-resolution structure of human D-glyceraldehyde-3-phosphate dehydrogenase. (PubMed id 16510976)3, 4 Jenkins J.L. and Tanner J.J. (2006)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)3, 4 Rush J.... Comb M.J. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Association of late-onset Alzheimer's disease with genetic variation in multiple members of the GAPD gene family. (PubMed id 15507493)3, 6 Li Y....Grupe A. (2004)
- Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)3, 4 Gevaert K.... Vandekerckhove J. (2003)
- Glyceraldehyde-3-phosphate dehydrogenase is phosphorylated by protein kinase Ciota /lambda and plays a role in microtubule dynamics in the early secretory pathway. (PubMed id 11724794)3, 4 Tisdale E.J. (2002)
|
Search for GAPDH
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing GAPDH
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing GAPDH
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GAPDH(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for GAPDH(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for GAPDH:

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Incremental update: 13 Oct 2009
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