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Aliases for GANAB Gene

Aliases for GANAB Gene

  • Glucosidase II Alpha Subunit 2 3 5
  • Neutral Alpha-Glucosidase AB 2 3
  • Alpha-Glucosidase 2 3 4
  • EC 3.2.1.84 4 61
  • G2AN 3 4
  • Glucosidase, Alpha; Neutral AB 2
  • Glucosidase II Subunit Alpha 4
  • KIAA0088 4
  • EC 3.2.1 61
  • GLUII 3
  • GIIA 3
  • PKD3 3

External Ids for GANAB Gene

Previous GeneCards Identifiers for GANAB Gene

  • GC11U990054
  • GC11M062166
  • GC11M062148
  • GC11M062430
  • GC11M058721
  • GC11M062481
  • GC11M062675
  • GC11M062689
  • GC11M062718

Summaries for GANAB Gene

Entrez Gene Summary for GANAB Gene

  • This gene encodes the alpha subunit of glucosidase II and a member of the glycosyl hydrolase 31 family of proteins. The heterodimeric enzyme glucosidase II plays a role in protein folding and quality control by cleaving glucose residues from immature glycoproteins in the endoplasmic reticulum. Expression of the encoded protein is elevated in lung tumor tissue and in response to UV irradiation. Mutations in this gene cause autosomal-dominant polycystic kidney and liver disease. [provided by RefSeq, Jul 2016]

GeneCards Summary for GANAB Gene

GANAB (Glucosidase II Alpha Subunit) is a Protein Coding gene. Diseases associated with GANAB include Polycystic Liver Disease and Glycogen Storage Disease Ii. Among its related pathways are Protein processing in endoplasmic reticulum and Transport to the Golgi and subsequent modification. GO annotations related to this gene include poly(A) RNA binding and hydrolase activity, hydrolyzing O-glycosyl compounds. An important paralog of this gene is GANC.

UniProtKB/Swiss-Prot for GANAB Gene

  • Cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins.

Tocris Summary for GANAB Gene

  • Glycosylases are a group of enzymes that includes glucosidases, mannosidases and heparanases. There are two glucosidase subtypes, both found in the gut. They hydrolyze terminal (1,4)alpha-glucosidic linkages and (1,6)beta-glucosidic linkages, liberating alpha-glucose and beta-glucose.

Gene Wiki entry for GANAB Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GANAB Gene

Genomics for GANAB Gene

Regulatory Elements for GANAB Gene

Enhancers for GANAB Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around GANAB on UCSC Golden Path with GeneCards custom track

Promoters for GANAB Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for GANAB Gene

Chromosome:
11
Start:
62,624,826 bp from pter
End:
62,646,726 bp from pter
Size:
21,901 bases
Orientation:
Minus strand

Genomic View for GANAB Gene

Genes around GANAB on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GANAB Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GANAB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GANAB Gene

Proteins for GANAB Gene

  • Protein details for GANAB Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14697-GANAB_HUMAN
    Recommended name:
    Neutral alpha-glucosidase AB
    Protein Accession:
    Q14697
    Secondary Accessions:
    • A6NC20
    • Q8WTS9
    • Q9P0X0

    Protein attributes for GANAB Gene

    Size:
    944 amino acids
    Molecular mass:
    106874 Da
    Quaternary structure:
    • Heterodimer of a catalytic alpha subunit (GANAB) and a beta subunit (PRKCSH). Binds glycosylated PTPRC (By similarity).
    SequenceCaution:
    • Sequence=AAH65266.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for GANAB Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GANAB Gene

Post-translational modifications for GANAB Gene

  • Ubiquitination at Lys 48, Lys 269, Lys 462, Lys 472, Lys 491, Lys 899, Lys 908, and Lys 930
  • Glycosylation at Asn 97
  • Modification sites at PhosphoSitePlus

Domains & Families for GANAB Gene

Suggested Antigen Peptide Sequences for GANAB Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q14697

UniProtKB/Swiss-Prot:

GANAB_HUMAN :
  • Belongs to the glycosyl hydrolase 31 family.
Family:
  • Belongs to the glycosyl hydrolase 31 family.
genes like me logo Genes that share domains with GANAB: view

No data available for Gene Families for GANAB Gene

Function for GANAB Gene

Molecular function for GANAB Gene

GENATLAS Biochemistry:
glucosidase,alpha-,neutral AB
UniProtKB/Swiss-Prot CatalyticActivity:
Hydrolysis of terminal (1->3)-alpha-D-glucosidic links in (1->3)-alpha-D-glucans.
UniProtKB/Swiss-Prot Function:
Cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins.

Enzyme Numbers (IUBMB) for GANAB Gene

Gene Ontology (GO) - Molecular Function for GANAB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030246 carbohydrate binding IEA --
GO:0033919 glucan 1,3-alpha-glucosidase activity IEA --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with GANAB: view
genes like me logo Genes that share phenotypes with GANAB: view

Animal Model Products

  • Taconic Biosciences Mouse Models for GANAB

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GANAB Gene

Localization for GANAB Gene

Subcellular locations from UniProtKB/Swiss-Prot for GANAB Gene

Endoplasmic reticulum. Golgi apparatus. Melanosome. Note=Identified by mass spectrometry in melanosome fractions from stage I to stage IV.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GANAB Gene COMPARTMENTS Subcellular localization image for GANAB gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 5
golgi apparatus 4
cytosol 2
lysosome 2
nucleus 2
plasma membrane 2
vacuole 2
chloroplast 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for GANAB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005788 endoplasmic reticulum lumen TAS --
GO:0005794 Golgi apparatus IEA --
GO:0016020 membrane IDA 19946888
GO:0017177 glucosidase II complex IEA --
GO:0031012 extracellular matrix IDA 23979707
genes like me logo Genes that share ontologies with GANAB: view

Pathways & Interactions for GANAB Gene

genes like me logo Genes that share pathways with GANAB: view

UniProtKB/Swiss-Prot Q14697-GANAB_HUMAN

  • Pathway: Glycan metabolism; N-glycan metabolism.

Gene Ontology (GO) - Biological Process for GANAB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005975 carbohydrate metabolic process IEA --
GO:0006457 protein folding TAS --
genes like me logo Genes that share ontologies with GANAB: view

No data available for SIGNOR curated interactions for GANAB Gene

Drugs & Compounds for GANAB Gene

(9) Drugs for GANAB Gene - From: DrugBank, ApexBio, HMDB, and Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Miglitol Approved Pharma Target, antagonist 12
Voglibose Approved, Investigational Pharma α-glucosidases inhibitor 23
Water Approved Pharma 0
Acarbose Approved, Investigational Pharma Alpha-glucosidase inhibitor, Glucosidase alpha inhibitor (intestinal) 83
1-Deoxynojirimycin Experimental Pharma Glucosidase I and II inhibitor 23

(2) Additional Compounds for GANAB Gene - From: Tocris and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
D-Glucose
  • Roferose ST
  • (+)-Glucose
  • Anhydrous dextrose
  • Cerelose
  • Cerelose 2001
50-99-7
Miglustat hydrochloride
210110-90-0

(5) Tocris Compounds for GANAB Gene

Compound Action Cas Number
1-Deoxynojirimycin Glucosidase I and II inhibitor 19130-96-2
Acarbose Glucosidase alpha inhibitor (intestinal) 56180-94-0
Kifunensine Inhibitor of class I alpha-mannosidases 109944-15-2
Miglustat hydrochloride alpha-glucosidase I and II inhibitor. Also inhibits ceramide-specific glycosyltransferases 210110-90-0
Swainsonine Inhibitor of alpha-mannosidase II 72741-87-8

(3) ApexBio Compounds for GANAB Gene

Compound Action Cas Number
N-Nonyldeoxynojirimycin 81117-35-3
Sinensetin α-glucosidase inhibitor, selective 2306-27-6
Voglibose α-glucosidases inhibitor 83480-29-9
genes like me logo Genes that share compounds with GANAB: view

Transcripts for GANAB Gene

Unigene Clusters for GANAB Gene

Glucosidase, alpha; neutral AB:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GANAB Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b · 7c · 7d · 7e ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b · 10c ^ 11a ·
SP1: - - - - -
SP2: - - - - - -
SP3: - - -
SP4: - - -
SP5: - - -
SP6: - -
SP7: - - - -
SP8: - - - -
SP9:
SP10:
SP11: - -
SP12: - - - - -
SP13: - - - -
SP14:
SP15:
SP16: - - - - - - -
SP17: -

ExUns: 11b ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22a · 22b ^ 23 ^ 24 ^ 25a · 25b · 25c
SP1: -
SP2: -
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:

Relevant External Links for GANAB Gene

GeneLoc Exon Structure for
GANAB
ECgene alternative splicing isoforms for
GANAB

Expression for GANAB Gene

mRNA expression in normal human tissues for GANAB Gene

Protein differential expression in normal tissues from HIPED for GANAB Gene

This gene is overexpressed in Lymph node (8.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for GANAB Gene



Protein tissue co-expression partners for GANAB Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of GANAB Gene:

GANAB

SOURCE GeneReport for Unigene cluster for GANAB Gene:

Hs.595071

mRNA Expression by UniProt/SwissProt for GANAB Gene:

Q14697-GANAB_HUMAN
Tissue specificity: Detected in placenta.
genes like me logo Genes that share expression patterns with GANAB: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for GANAB Gene

Orthologs for GANAB Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for GANAB Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia GANAB 34
  • 89.75 (n)
  • 92.44 (a)
GANAB 35
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GANAB 34
  • 90.91 (n)
  • 93.07 (a)
GANAB 35
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ganab 34
  • 87.62 (n)
  • 91.92 (a)
Ganab 16
Ganab 35
  • 92 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GANAB 34
  • 99.59 (n)
  • 99.59 (a)
GANAB 35
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ganab 34
  • 87.35 (n)
  • 91.29 (a)
oppossum
(Monodelphis domestica)
Mammalia GANAB 35
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 20 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 65 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia ganab 34
  • 65.6 (n)
  • 68.55 (a)
Str.3740 34
zebrafish
(Danio rerio)
Actinopterygii LOC100334924 34
  • 66.53 (n)
  • 68.55 (a)
GANAB (1 of 3) 35
  • 66 (a)
OneToMany
GANAB (2 of 3) 35
  • 59 (a)
OneToMany
GANAB (3 of 3) 35
  • 64 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000862 34
  • 53.8 (n)
  • 49.46 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG14476 34
  • 55.02 (n)
  • 47.86 (a)
CG14476 35
  • 47 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea aagr-3 34
  • 52.11 (n)
  • 48.87 (a)
aagr-3 35
  • 45 (a)
ManyToMany
aagr-4 35
  • 45 (a)
ManyToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AAR173C 34
  • 47.55 (n)
  • 39.22 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F09735g 34
  • 47.11 (n)
  • 39.72 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ROT2 34
  • 47.12 (n)
  • 43.61 (a)
ROT2 35
  • 35 (a)
OneToMany
ROT2 37
thale cress
(Arabidopsis thaliana)
eudicotyledons RSW3 34
  • 53.53 (n)
  • 50 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.3471 34
barley
(Hordeum vulgare)
Liliopsida Hv.10182 34
rice
(Oryza sativa)
Liliopsida Os.6168 34
Os03g0216600 34
  • 56.51 (n)
  • 52.39 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.3796 34
bread mold
(Neurospora crassa)
Ascomycetes NCU04203 34
  • 52.05 (n)
  • 44.5 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes gls2 34
  • 49.28 (n)
  • 44.42 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 49 (a)
OneToMany
Species where no ortholog for GANAB was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GANAB Gene

ENSEMBL:
Gene Tree for GANAB (if available)
TreeFam:
Gene Tree for GANAB (if available)

Paralogs for GANAB Gene

Paralogs for GANAB Gene

(2) SIMAP similar genes for GANAB Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with GANAB: view

Variants for GANAB Gene

Sequence variations from dbSNP and Humsavar for GANAB Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs2276295 - 62,634,863(+) GTCCT(C/T)GGGCA reference, missense
rs2276296 - 62,634,921(+) TGGCC(A/C/G)TGCTG reference, missense
rs1063445 - 62,632,636(-) CTCAT(C/T)GCGAC reference, missense
rs7949030 -- 62,627,409(+) TCAGA(A/G)ATGCT intron-variant
rs9736354 -- 62,640,011(+) CGGGC(A/G)GATCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GANAB Gene

Variant ID Type Subtype PubMed ID
esv3584599 CNV gain 24956385
nsv555174 CNV gain 21841781
nsv825939 CNV gain 20364138
nsv832182 CNV gain+loss 17160897

Variation tolerance for GANAB Gene

Residual Variation Intolerance Score: 27.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.24; 62.35% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GANAB Gene

Human Gene Mutation Database (HGMD)
GANAB
SNPedia medical, phenotypic, and genealogical associations of SNPs for
GANAB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GANAB Gene

Disorders for GANAB Gene

MalaCards: The human disease database

(3) MalaCards diseases for GANAB Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
polycystic liver disease
  • isolated polycystic liver disease
glycogen storage disease ii
  • acid maltase deficiency
liver disease
  • disorder of liver
- elite association - COSMIC cancer census association via MalaCards
Search GANAB in MalaCards View complete list of genes associated with diseases

Relevant External Links for GANAB

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GANAB
genes like me logo Genes that share disorders with GANAB: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GANAB Gene

Publications for GANAB Gene

  1. Identity of neutral alpha-glucosidase AB and the glycoprotein processing enzyme glucosidase II. Biochemical and genetic studies. (PMID: 3881423) Martiniuk F. … Hirschhorn R. (J. Biol. Chem. 1985) 2 3 4 65
  2. Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. (PMID: 17081065) Chi A. … Hunt D.F. (J. Proteome Res. 2006) 3 4 65
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  4. The alpha- and beta-subunits are required for expression of catalytic activity in the hetero-dimeric glucosidase II complex from human liver. (PMID: 10764838) Treml K. … Bause E. (Glycobiology 2000) 2 3 65
  5. The heterodimeric structure of glucosidase II is required for its activity, solubility, and localization in vivo. (PMID: 10929008) Pelletier M.F. … Thomas D.Y. (Glycobiology 2000) 3 4 65

Products for GANAB Gene

Sources for GANAB Gene

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