GAGE2D Gene
protein-coding GIFtS: 32
GCID: GC0XP049252
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G antigen 2D
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Aliases
for GAGE2D gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| G Antigen 2D1 2 | | GAGE-2D2 3 | | GAGE81 2 | | GAGE-82 3 | | Cancer/Testis Antigen 4.82 3 | | G Antigen 83 | | CT4.82 3 | | |
Export aliases for GAGE2D gene to outside databasesPrevious GC identifers: GC0XU900855 GC0XP049096 GC0XP049098 GC0XP049099 GC0XP049191 GC0XP049206 GC0XP049209 GC0XP049219 GC0XP049229 GC0XP049236 GC0XP049246 |
Summaries
for GAGE2D gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for GAGE2D gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for GAGE2D
Other transcription factors
Search SABiosciences Chromatin IP Primers for GAGE2D
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GAGE2D |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xp11.23 Ensembl cytogenetic band: Xp11.23 HGNC cytogenetic band: Xp11.23GAGE2D Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP049252: view genomic region
(about GC identifiers)
Start:
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49,207,116 bp from pter |
End:
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49,214,420 bp from pter |
Size:
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7,305 bases |
Orientation:
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plus strand |
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Proteins
for GAGE2D gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: GGE2D_HUMAN, Q9UEU5 (See
protein sequence)Recommended Name: G antigen 2D Size: 116 amino acids; 12764 Da
Miscellaneous: This gene belongs to a family of genes organized in clustered repeats. They have a high degree ofpredicted sequence identity, but differ by scattered single nucleotide substitution. Their sequences contain eitherthe antigenic peptide YYWPRPRRY or YRPRPRRY which is recognized by cytotoxic T-cells
Caution: The first GAGE nomenclature was based on identified mRNA sequences, but the high identity of the GAGE membersmade impossible to separate products of paralogous genes from polymorph products. PubMed:18179644 presented a new GAGEgene nomenclature based on the identified genes and their products
Secondary accessions: A6NG46 A6NNR8 B7ZL76 Q4V325Explore the universe of human proteins at neXtProt for GAGE2D: NX_Q9UEU5
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9UEU5
GAGE2D Protein expression data from MOPED and PaxDb: --
REFSEQ proteins: NP_001091877.1
ENSEMBL proteins: ENSP00000386110
Human Recombinant Protein Products for GAGE2D:
GAGE2D Antibody Products:
Assay Products for GAGE2D: |
Protein
Domains /
Families
for GAGE2D gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
GAGE2D for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9UEU5ProtoNet protein and cluster: Q9UEU5 1 Blocks protein family: IPB008625 GAGE
UniProtKB/Swiss-Prot: GGE2D_HUMAN, Q9UEU5Similarity: Belongs to the GAGE family |
Function
for GAGE2D gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0005515 | protein binding |
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GAGE2D for ontologies About GeneDecksing
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GAGE2D
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GAGE2D
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: GAGE2D (NM_001098407) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GAGE2D | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat GAGE2D |
|
Pathways & Interactions
for GAGE2D gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GAGE2D
2 Interacting proteins for GAGE2D (Q9UEU51, 2, 3) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006968 | cellular defense response |
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GAGE2D for ontologies About GeneDecksing
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Drugs & Compounds
for GAGE2D gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for GAGE2D
Search CenterWatch for drugs/clinical trials and news about GAGE2D / GGE2D
|
Transcripts
for GAGE2D gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for GAGE2D gene: NM_001098407.1 1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000404720(uc010njc.3 uc004dnt.4 uc004dnu.4 uc004dnv.4)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GAGE2D
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GAGE2D
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: GAGE2D (NM_001098407) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GAGE2D | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat GAGE2D |
GeneLoc Exon Structure
|
Expression
for GAGE2D gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| GAGE2D expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
Genevestigator expression for GAGE2D
UniProtKB/Swiss-Prot: GGE2D_HUMAN, Q9UEU5Tissue specificity: Not expressed in normal tissues, except in testis, but expressed by a large proportion of tumors ofvarious histological origins
SABiosciences Custom PCR Arrays for GAGE2D
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for GAGE2D
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat GAGE2D | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat GAGE2D | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat GAGE2D |
Orthologs
for GAGE2D gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for GAGE2D (if available)
TreeFam Gene Tree for GAGE2D (if available) |
Paralogs
for GAGE2D gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for GAGE2D gene
- GAGE2C1 2 GAGE2E1 2 GAGE2B1 2 GAGE131 2 GAGE2A1 2 GAGE12I1 2 GAGE12G1 2 GAGE12F1 2
- GAGE11 2 GAGE12J1 2 GAGE12C1 2 GAGE12D1 2 GAGE12E1 2 GAGE12H1 2 PAGE22 GAGE42
- XAGE32 GAGE102 PAGE32 XAGE52 XAGE2B2 PAGE52 PAGE2B2 PAGE12
- XAGE22 PAGE42
18/25 SIMAP similar genes for GAGE2D using alignment to 1 protein entry: GGE2D_HUMAN(see all similar genes):GAGE2E GAGE2A GAGE2B GAGE2C GAGE13 GAGE3
GAGE5 GAGE6 GAGE12B GAGE12C GAGE12D GAGE12E
GAGE12F GAGE12G GAGE12H GAGE12I GAGE12J GAGE4
GAGE2D for paralogs About GeneDecksing
|
Genomic Variants
for GAGE2D gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr X pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for GAGE2D (49207116 - 49214420 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 5 variations for GAGE2D
5 CNVs: 33164 96665 83510 73974 31551 | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for GAGE2D gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 GAGE2D for disorders About MalaCards
GAGE2D for disorders About GeneDecksing
OMIM gene information: 300735
OMIM disorders: --
Export disorders for GAGE2D gene to outside databases
|
Publications
for GAGE2D gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for GAGE2D gene integrated from 9 sources:
(articles sorted by number of sources associating them with GAGE2D) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- An overview of the GAGE cancer/testis antigen family with the inclusion of newly identified members. (PubMed id 18179644)1, 2 Gjerstorff M.F. and Ditzel H.J. (2008)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Characterization of the GAGE genes that are expressed in various human cancers and in normal testis. (PubMed id 10397259)2 De Backer O.... van der Bruggen P. (1999)
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External Searches for GAGE2D gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing GAGE2D gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing GAGE2D gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GAGE2D gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for GAGE2D | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for GAGE2D gene:
Search GeneIP for patents involving GAGE2D
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for GAGE2D gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for GAGE2D | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for GAGE2D | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for GAGE2D | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for GAGE2D | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GAGE2D | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GAGE2D | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for GAGE2D | | OriGene Custom Protein Services for GAGE2D | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat GAGE2D | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing GAGE2D | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GAGE2D | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat GAGE2D | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat GAGE2D | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat GAGE2D |
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| | | | Search Tocris compounds for GAGE2D |
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 | | | GAGE2D Proteins, Antibodies, CLIAs, and ELISAs |
| | | |  |  |  |  | | | | Search ThermoFisher Antibodies for GAGE2D |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat GAGE2D |
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