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Aliases for GAGE12J Gene

Aliases for GAGE12J Gene

  • G Antigen 12J 2 3 5
  • G Antigen 11 2 3
  • GAGE-12J 4
  • GAGE11 3

External Ids for GAGE12J Gene

Previous HGNC Symbols for GAGE12J Gene

  • GAGE11

Previous GeneCards Identifiers for GAGE12J Gene

  • GC0XP049071
  • GC0XP049072
  • GC0XP049074
  • GC0XP049180
  • GC0XP049181
  • GC0XP049182

Summaries for GAGE12J Gene

GeneCards Summary for GAGE12J Gene

GAGE12J (G Antigen 12J) is a Protein Coding gene. An important paralog of this gene is GAGE13.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GAGE12J Gene

Genomics for GAGE12J Gene

Regulatory Elements for GAGE12J Gene

Enhancers for GAGE12J Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF049052 0.5 ENCODE 16.2 -268.0 -268025 2.2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS CEBPZ ENSG00000204620 GAGE12J GAGE12C GAGE12G GAGE12H GAGE2A PAGE1 ENSG00000270747 SSX9 SSXP9
GH0XF049037 1.1 ENCODE 16.2 -280.9 -280899 7.0 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 GAGE12J GAGE12C GAGE12G GAGE12H GAGE2A SSXP9 PAGE1 ENSG00000270747 SSX9 PRAF2
GH0XF048589 1.4 Ensembl ENCODE 16.2 -730.8 -730800 3.1 ELF3 ARNT CREB3L1 RAD21 ZNF2 ZNF366 SCRT2 FOS YY2 USF2 ENSG00000204620 ENSG00000270747 SSXP9 SSX9 GAGE12G GAGE2A GAGE12C GAGE12J GAGE12H ENSG00000270012
GH0XF048910 0.2 ENCODE 16.2 -409.9 -409858 4.0 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF121 ELK1 GAGE12J SSXP9 ENSG00000270747 GAGE12G GAGE2A SSX9 PAGE1 GAGE12C GAGE12H ENSG00000204620
GH0XF049307 1.3 Ensembl ENCODE 0.4 -12.8 -12817 2.8 HDGF ATF1 ZNF121 GLIS2 ZNF143 ZNF207 KLF7 ZNF263 SP3 REST GAGE13 GAGE10 GAGE12J
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around GAGE12J on UCSC Golden Path with GeneCards custom track

Genomic Location for GAGE12J Gene

Chromosome:
X
Start:
49,322,030 bp from pter
End:
49,329,387 bp from pter
Size:
7,358 bases
Orientation:
Plus strand

Genomic View for GAGE12J Gene

Genes around GAGE12J on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GAGE12J Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GAGE12J Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GAGE12J Gene

Proteins for GAGE12J Gene

  • Protein details for GAGE12J Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NER3-GG12J_HUMAN
    Recommended name:
    G antigen 12J
    Protein Accession:
    A6NER3

    Protein attributes for GAGE12J Gene

    Size:
    117 amino acids
    Molecular mass:
    12896 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • This gene belongs to a multigene family expressed in a large variety of tumors whereas in normal tissues, expression is restricted to germ cells. These genes organized in clustered repeats, have a high degree of predicted sequence identity, but differ by scattered single nucleotide substitution. Their sequences contain either the antigenic peptide YYWPRPRRY or YRPRPRRY which is recognized by cytotoxic T-cells.

neXtProt entry for GAGE12J Gene

Post-translational modifications for GAGE12J Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GAGE12J Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for GAGE12J Gene

Domains & Families for GAGE12J Gene

Protein Domains for GAGE12J Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GAGE12J Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NER3

UniProtKB/Swiss-Prot:

GG12J_HUMAN :
  • Belongs to the GAGE family.
Family:
  • Belongs to the GAGE family.
genes like me logo Genes that share domains with GAGE12J: view

No data available for Gene Families for GAGE12J Gene

Function for GAGE12J Gene

Phenotypes for GAGE12J Gene

GenomeRNAi human phenotypes for GAGE12J:
genes like me logo Genes that share phenotypes with GAGE12J: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GAGE12J Gene

Localization for GAGE12J Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GAGE12J Gene COMPARTMENTS Subcellular localization image for GAGE12J gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for GAGE12J Gene

Pathways & Interactions for GAGE12J Gene

SuperPathways for GAGE12J Gene

No Data Available

Interacting Proteins for GAGE12J Gene

Gene Ontology (GO) - Biological Process for GAGE12J Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GAGE12J Gene

Transcripts for GAGE12J Gene

mRNA/cDNA for GAGE12J Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GAGE12J Gene

No ASD Table

Relevant External Links for GAGE12J Gene

GeneLoc Exon Structure for
GAGE12J
ECgene alternative splicing isoforms for
GAGE12J

Expression for GAGE12J Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GAGE12J Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GAGE12J Gene

This gene is overexpressed in Testis (x50.6).

NURSA nuclear receptor signaling pathways regulating expression of GAGE12J Gene:

GAGE12J
genes like me logo Genes that share expression patterns with GAGE12J: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for GAGE12J Gene

Orthologs for GAGE12J Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for GAGE12J Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 93 (a)
OneToMany
Species where no ortholog for GAGE12J was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for GAGE12J Gene

ENSEMBL:
Gene Tree for GAGE12J (if available)
TreeFam:
Gene Tree for GAGE12J (if available)

Paralogs for GAGE12J Gene

genes like me logo Genes that share paralogs with GAGE12J: view

Variants for GAGE12J Gene

Sequence variations from dbSNP and Humsavar for GAGE12J Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs10126890 -- 49,324,883(+) GTCCA(A/G)CTAAT intron-variant
rs10126926 -- 49,324,861(+) ATTTT(C/T)CATAG intron-variant
rs11091255 -- 49,326,937(+) tggtg(C/G)catct intron-variant
rs11091256 -- 49,327,181(+) AGCAT(C/T)ATATT intron-variant
rs11091257 -- 49,327,464(+) TCATG(C/T)GGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GAGE12J Gene

Variant ID Type Subtype PubMed ID
esv3334428 CNV duplication 20981092
esv3365328 CNV duplication 20981092
esv3383847 CNV duplication 20981092
nsv1129077 CNV duplication 24896259
nsv6896 CNV insertion 18451855
nsv6897 CNV insertion 18451855

Variation tolerance for GAGE12J Gene

Gene Damage Index Score: 4.72; 66.27% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GAGE12J Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GAGE12J

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GAGE12J Gene

Disorders for GAGE12J Gene

Relevant External Links for GAGE12J

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GAGE12J

No disorders were found for GAGE12J Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GAGE12J Gene

Publications for GAGE12J Gene

  1. An overview of the GAGE cancer/testis antigen family with the inclusion of newly identified members. (PMID: 18179644) Gjerstorff M.F. … Ditzel H.J. (Tissue Antigens 2008) 3 4 64
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for GAGE12J Gene

Sources for GAGE12J Gene

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