 |
 | Services
| |
 |
Aliases & Descriptions for GADD45A
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DDIT-1 3 | | DDIT1 2, 3 | | GADD45 1, 2, 3 | | OTTHUMP00000010979 2 |
| | | Descriptions |
|---|
| DNA damage-inducible transcript 1 2 | | DNA damage-inducible transcript-1 2 | | DNA-damage-inducible transcript 1 2, 3 | | growth arrest and DNA-damage-inducible 45 alpha 2 | | growth arrest and DNA-damage-inducible, alpha 2 |
|
| | Search outside databases for aliases for GADD45A genePrevious GC identifers: GC01P068111 GC01P067082 GC01P067508 GC01P067520 |
Summaries for GADD45A(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for GADD45A: This gene is a member of a group of genes whose transcript levels are increased following stressful growth arrest conditions and treatment with DNA-damaging agents. The protein encoded by this gene responds to environmental stresses by mediating activation of the p38/JNK pathway via MTK1/MEKK4 kinase. The DNA damage-induced transcription of this gene is mediated by both p53-dependent and -independent mechanisms. [provided by RefSeq] UniProtKB/Swiss-Prot: GA45A_HUMAN, P24522Function: Binds to proliferating cell nuclear antigen. Might affect PCNA interaction with some CDK (cell division protein kinase) complexes; stimulates DNA excision repair in vitro and inhibits entry of cells into S phaseGene Wiki entry for GADD45A |
Genomic Location for GADD45A
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the GADD45A gene 
Entrez Gene cytogenetic band: 1p31.2-p31.1 Ensembl cytogenetic band: 1p31.3 HGNC cytogenetic band: 1p31.2GADD45A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P067862:
(about GC identifiers)
Start:
|
67,923,471 bp from pter |
End:
|
67,926,607 bp from pter |
Size:
|
3,137 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000001.9 NT_032977.8
| Proteins for GADD45A
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: GA45A_HUMAN, P24522 (See
protein sequence)Recommended Name: Growth arrest and DNA-damage-inducible protein GADD45 alpha Size: 165 amino acids; 18336 Da
Subunit: Interacts with GADD45GIP1
PDB structures from and Proteopedia :2KG4 (3D)
 REFSEQ proteins: NP_001915.1
ENSEMBL proteins: ENSP00000360024 ENSP00000360025
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: GADD45A 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for GADD45A: Assays for GADD45A: | Protein
Domains/ Families for GADD45A(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P24522
ProtoNet protein and cluster: P24522 1 Blocks protein family: IPB004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45
UniProtKB/Swiss-Prot: GA45A_HUMAN, P24522Similarity: Belongs to the GADD45 family | Gene Function for GADD45A
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001924
Applied Biosystems Silencer® siRNAs for GADD45A
Sigma-Aldrich siRNA and siRNA Panels for GADD45A  Sigma-Aldrich shRNA Panels and shRNA for GADD45A  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001924                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001924                                  untagged cDNA clone in CMV expression vector: NM_001924 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001924
UniProtKB/Swiss-Prot: GA45A_HUMAN, P24522Function: Binds to proliferating cell nuclear antigen. Might affect PCNA interaction with some CDK (cell division protein kinase) complexes; stimulates DNA excision repair in vitro and inhibits entry of cells into S phaseInduction: By UV radiation, X-rays, growth arrest and alkylating agents. The induction is mediate by some kinase(s) other than PKCGenatlas biochemistry entry for GADD45A:growth arrest and DNA-damage-inducible transcript alpha,involved in UV- and methyl methanisulfonate (MMS)-induced G2 arrest,p53-responsive stress protein activating MEKK4,interacting with the four core histones,mediating G2/M checkpoint,down-regulated by cyclin B1 and Cdc25C expression,inactivating (M phase promoting factor) MPF through interaction with CDC2 but not cyclin B1,putative downregulated c-Myc target gene,modifying DNA accessibility on damaged chromatin10 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Gadd45a):
1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
IEA | -- | About this table | Pathways & Interactions for GADD45A
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for GADD45A (Your Favorite Gene powered by Ingenuity) (see all 6
) 
Gene Network CentralTM Interacting Genes and Proteins Network for GADD45A 
5/80 Interacting proteins for GADD45A (P245221, 2 ENSP000003600253) via UniProtKB, MINT, and/or STRING (see all 80
)About this table
5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
): About this table
|
Drugs & Compounds for GADD45A(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for GADD45A 10/14 Novoseek chemical compound relationships for GADD45A gene (see all 14
)
About this table
|
Transcripts for GADD45A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001924
Sigma-Aldrich siRNA and siRNA Panels for GADD45A  Sigma-Aldrich shRNA Panels and shRNA for GADD45A  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001924 REFSEQ mRNAs for GADD45A gene: NM_001924.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001924               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001924                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001924                                  untagged cDNA clone in CMV expression vector: NM_001924  Additional cDNA sequence: AK314991.1 BC011757.2 CR608507.1 CR609553.1 CR611787.1 CR612467.1 CR612719.1 CR613302.1 CR623510.1 DQ008445.1 EF581092.1 EF614238.1 M60974.1 7 DOTS entries: DT.114884 DT.114885 DT.95226036 DT.121441466 DT.95374637 DT.100743098 DT.95374636 24/185 AceView cDNA sequences (see all 185
):AW014421 BF939687 BC011757 BG575117 BM999387 CD365249 NM_001924 BQ575818 BF033052 CR623510 CA412788 BX090426 CR612719 AU126574 CA748690 M60974 BP374942 CR611787 BF726789 CB045463 CR608507 BF726748 BE857043 BU632621
highest scoring ESTs for GADD45A:M60974 AA036953 AA136799 AA136869 AA147214 AA494367 AA700593 AA931261 AA931403 AA992456 Unigene Cluster for GADD45A: Growth arrest and DNA-damage-inducible, alpha Hs.80409 [show with all ESTs]Unigene Representative Sequence: CR612719
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for GADD45A
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | |
| SP1: | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for GADD45A
2 Ensembl transcripts including schematic representations: ENST00000370985
ENST00000370986
|
Expression for GADD45A
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| GADD45A expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for GADD45A
1 / 2 / 3 3 probe-sets matching GADD45A gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AAAAGTTATT
SOURCE GeneReport for Unigene cluster: Hs.80409
Expression variation in blood from EXPOLDB for GADD45A |
Orthologs for GADD45A
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for GADD45A gene from 5/8 species (see all 8
)
About this table Species with no ortholog for GADD45A
ENSEMBL Gene Tree for GADD45A | Paralogs for GADD45A(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for GADD45A gene
- GADD45B2 GADD45G2
|
SNPs/Variants for GADD45A(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for GADD45A (up to first 250kb)
|
Disorders & Mutations for GADD45A
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 126335
UniProtKB/Swiss-Prot: GA45A_HUMAN, P24522
Induction of GADD45 in ataxia telangiectasia cells is abnormal10/25 Novoseek disease relationships for GADD45A gene (see all 25
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| ataxia telangiectasia |
51.49 |
6 |
8500101 (1), 1990262 (1), 1423616 (1), 14609732 (1) (see all 6) |
| tumors |
44.64 |
42 |
16827157 (5), 16211300 (2), 8631022 (2), 8834260 (2) (see all 29) |
| cancer |
43.31 |
27 |
19003803 (3), 10327059 (2), 11063132 (1), 17436581 (1) (see all 14) |
| ovarian cancer |
35.70 |
5 |
14506229 (3), 19305429 (2) |
| colon carcinoma |
29.51 |
7 |
15772983 (3), 8631022 (1), 8950993 (1), 14642075 (1) |
| pancreatic cancer |
28.74 |
13 |
16274047 (5), 17230496 (5), 19003803 (1), 12171884 (1) |
| breast carcinoma |
28.19 |
4 |
15377844 (2), 15064713 (1), 10454607 (1) |
| xeroderma pigmentosum |
27.11 |
1 |
12767947 (1) |
| colon cancer |
24.64 |
2 |
8938795 (1), 15961301 (1) |
| leukemia |
22.69 |
3 |
15031557 (1), 15744335 (1), 11251170 (1) |
About this table
1 PharmGKB disease relationship for GADD45A geneAbout this table
Human Genome Epidemiology Navigator: GADD45A (4 documents)
|
Medical News for GADD45A(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for GADD45A (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/324 PubMed articles for GADD45A gene (see all 324
):- Induction by ionizing radiation of the gadd45 gene in cultured human cells: lack of mediation by protein kinase C. (PubMed id 1990262)1, 2, 3, 4 Papathanasiou M.A.... Fornace A.J. Jr. (1991)
- Analysis of the mammalian gadd45 gene and its response to DNA damage. (PubMed id 8226988)2, 3, 4 Hollander M.C....Fornace A.J. (1993)
- Interaction of the p53-regulated protein Gadd45 with proliferating cell nuclear antigen. (PubMed id 7973727)1, 3, 4 Smith M.L.... Fornace A.J. Jr. (1994)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- CR6-interacting factor 1 interacts with Gadd45 family proteins and modulates the cell cycle. (PubMed id 12716909)3, 4 Chung H.K.... Shong M. (2003)
- The central region of Gadd45 is required for its interaction with p21/WAF1. (PubMed id 10912791)1, 3 Zhao H....Zhan Q. (2000)
- The GADD45 inhibition of Cdc2 kinase correlates with GADD45-mediated growth suppression. (PubMed id 10747892)1, 3 Jin S....Zhan Q. (2000)
- B23 regulates GADD45a nuclear translocation and contributes to GADD45a-induced cell cycle G2-M arrest. (PubMed id 15644315)1, 3 Gao H....Zhan Q. (2005)
- Mutation analysis of the Gadd45 gene at exon 4 in atypical fibroxanthoma. (PubMed id 19128509)1, 3 Sakamoto A....Tsuneyoshi M. (2009)
- Characterization of human Gadd45, a p53-regulated protein. (PubMed id 7798274)1, 3 Carrier F....Gilmer T.M. (1994)
|
Search for GADD45A
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing GADD45A
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing GADD45A
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GADD45A(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for GADD45A(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for GADD45A:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for GADD45A |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|