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Aliases & Descriptions for GAD2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 4.1.1.15 3 GAD-65 3 GAD65 1 , 2 , 3 MGC161605 2 MGC161607 2 OTTHUMP00000019335 2 OTTHUMP00000019336 2
Descriptions 65 kDa glutamic acid decarboxylase 3 Glutamate decarboxylase 65 kDa isoform 3 Glutamate decarboxylase-2 (pancreas) 2 glutamate decarboxylase 2 2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kD) 1 , 2 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) 2
Search outside databases for aliases for GAD2 genePrevious GC identifers: GC10P026240 GC10P026655 GC10P026509 GC10P026508
Summaries for GAD2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GAD2 : This gene encodes one of several forms of glutamic acid decarboxylase, identified as a majorautoantigen in insulin-dependent diabetes. The enzyme encoded is responsible for catalyzing theproduction of gamma-aminobutyric acid from L-glutamic acid. A pathogenic role for this enzyme hasbeen identified in the human pancreas since it has been identified as an autoantibody and anautoreactive T cell target in insulin-dependent diabetes. This gene may also play a role in thestiff man syndrome. Alternative splicing results in multiple transcript variants that encode thesame protein. [provided by RefSeq] UniProtKB/Swiss-Prot: DCE2_HUMAN, Q05329 Function : Catalyzes the production of GABA
Gene Wiki entry for GAD2
Genomic Location for GAD2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GAD2 gene Entrez Gene cytogenetic band: 10p11.23 Ensembl cytogenetic band: 10p12.1 HGNC cytogenetic band: 10p13-p11.2 GAD2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P026545:
(about GC identifiers )
Start:
26,545,242 bp from pter
End:
26,633,493 bp from pter
Size:
88,252 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.9 NT_008705.15 Proteins for GAD2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: DCE2_HUMAN, Q05329 (See
protein sequence )Recommended Name: Glutamate decarboxylase 2 Size : 585 amino acids; 65411 Da
Cofactor : Pyridoxal phosphate
Subunit : Homodimer
Subcellular location : Cytoplasm, cytosol. Cytoplasmic vesicle. Cell junction, synapse, presynapticcell membrane; Lipid-anchor. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmicside. Note=Associated to cytoplasmic vesicles. In neurons, cytosolic leaflet of Golgi membranesand presynaptic clusters
PDB structure from and Proteopedia : 1ES0 (3D)
 2OKK (3D)
 
Secondary accessions : Q9UD87
Post-translational modifications:
Phosphorylated; which does not affect kinetic parameters or subcellular location1
Palmitoylated; which is required for presynaptic clustering1
REFSEQ proteins (2 alternative transcripts):
NP_000809.1 NP_001127838.1 ENSEMBL proteins: ENSP00000259271 ENSP00000365437 ENSP00000365424 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/7 Gene Ontology (GO) cellular component terms (links to tree view) (see all 7
):
About this table Antibodies for GAD2: Invitrogen Antibodies for GAD2 Millipore Mono- and Polyclonal Antibodies for the study of GAD2 Sigma-Aldrich Antibody Arrays and Antibodies for GAD2 R&D Systems Antibodies for GAD2 (GAD2/GAD65) Cell Signaling Technology (CST) Antibodies for GAD2   Antibodies from Abcam (GAD65 , GAD65 + GAD67 ), each with their Abpromise SM Monoclonal and Polyclonal Antibodies from Abnova (GAD2 ) Novus Biologicals Antibodies for GAD2
Assays for GAD2:
Protein
Domains/ Families for GAD2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q05329 ProtoNet protein and cluster: Q05329
UniProtKB/Swiss-Prot: DCE2_HUMAN, Q05329 Similarity : Belongs to the group II decarboxylase family
Gene Function for GAD2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000818 Applied Biosystems Silencer ® siRNAs for GAD2 Sigma-Aldrich siRNA and siRNA Panels for GAD2 Sigma-Aldrich shRNA Panels and shRNA for GAD2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000818                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000818                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000818  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001134366 UniProtKB/Swiss-Prot: DCE2_HUMAN, Q05329 Function : Catalyzes the production of GABACatalytic activity : L-glutamate = 4-aminobutanoate + CO(2)Biophysicochemical properties : Kinetic parameters: KM=2.15 mM for glutamate;Enzyme Number (IUBMB): EC 4.1.1.15
Genatlas biochemistry entry for GAD2 :glutamate decarboxylase 2,islet beta cell,65kDa autoantigen in insulin-dependent diabetes mellitusand immunogen for autoreactive B cells
14 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Gad2) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for GAD2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for GAD2 (Your Favorite Gene powered by Ingenuity) (see all 7
) Gene Network CentralTM Interacting Genes and Proteins Network for GAD2 5/101 Interacting proteins for GAD2 (ENSP00000259271 3 ) via UniProtKB, MINT, and/or STRING (see all 101
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for GAD2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Sigma-Aldrich Small Molecules for GAD2:Inhibitor
Browse Tocris compounds for GAD2 10/18 Novoseek chemical compound relationships for GAD2 gene (see all 18
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
c-peptide
56.95
9
18725905 (1), 7926302 (1), 17448127 (1), 9405979 (1) (see all 6 )
tyrosine
42.67
29
10480509 (2), 11473034 (2), 10333047 (2), 15829408 (2) (see all 23 )
cysteine sulfinic acid
41.90
1
15070923 (1)
gliadin
30.13
4
11561218 (3), 19298606 (1)
glucose
8.89
15
8504767 (3), 10333047 (3), 10950838 (1), 1464667 (1) (see all 7 )
nitric oxide
3.31
2
11455199 (1), 18923069 (1)
hydrogen
3.08
1
14631117 (1)
cholesterol
3.03
2
12356867 (1)
125i
2.05
4
9027428 (3), 9166231 (1)
calcium
0.82
3
15079019 (1), 16879709 (1)
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Transcripts for GAD2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000818 Sigma-Aldrich siRNA and siRNA Panels for GAD2 Sigma-Aldrich shRNA Panels and shRNA for GAD2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000818 NM_001134366
REFSEQ mRNAs for GAD2 gene (2 alternative transcripts): NM_000818.2 NM_001134366.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000818 NM_001134366
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000818                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000818                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000818  
Additional cDNA sequence: AJ251501.1 AK127375.1 BC029517.1 BC126327.1 BC126329.1 M74826.1 M81882.1 X69936.1
7 DOTS entries : DT.100030691 DT.97813086 DT.309213 DT.40106160 DT.99992369 DT.95271608 DT.97803322
24/72 AceView cDNA sequences (see all 72
):AJ251501 BQ270007 AW593824 CA867379 BQ631948 BC029517 BM129659 CA868327 CA866890 BU947707 CA773573 BQ632241 BQ286666 BQ271116 BQ271408 CK902513 BM129726 BQ288018 CA841672 CA868081 CA866626 BM352037 AW196241 BI603771
highest scoring ESTs for GAD2 :M74826 BE673867 BM875372 CA943538 M81882 N34329 AJ251501 AW025935 BE327598 BI466995
Unigene Cluster for GAD2: Glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) Hs.231829 [show with all ESTs ] Unigene Representative Sequence: NM_000818 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000259271
ENST00000376261
ENST00000376248
Expression for GAD2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GAD2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GAD2 1 / 2 / 3
11 probe-sets matching GAD2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGGCAACCTGSOURCE GeneReport for Unigene cluster: Hs.231829 Expression variation in blood from EXPOLDB for GAD2
Orthologs for GAD2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GAD2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for GAD2 ENSEMBL Gene Tree for GAD2 Paralogs for GAD2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GAD2 gene GAD1 2 GADL1 2 CSAD 2
SNPs/Variants for GAD2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GAD2 (up to first 250kb)
Disorders & Mutations for GAD2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 138275 10/39 Novoseek disease relationships for GAD2 gene (see all 39
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
stiff-man syndrome
87.41
22
7519242 (2), 10753043 (2), 8904930 (2), 14610143 (2) (see all 16 )
diabetes mellitus insulin-dependent
85.94
55
8486775 (3), 7519242 (2), 10596966 (2), 8904930 (2) (see all 45 )
diabetes autoimmune
83.62
23
16734550 (1), 18706702 (1), 12021124 (1), 18487477 (1) (see all 19 )
autoimmunity
79.96
34
16970217 (2), 7532577 (2), 8779696 (2), 10868936 (2) (see all 28 )
autoimmune response
66.29
13
7519242 (1), 17130560 (1), 18706702 (1), 19120313 (1) (see all 12 )
autoimmune syndrome type ii polyglandular
65.39
6
7578849 (3), 12296864 (1)
coxsackie virus
65.29
8
9498628 (2), 9153283 (1), 9084973 (1), 12021098 (1) (see all 6 )
autoimmune diseases
65.19
14
9253351 (2), 11756577 (1), 10330300 (1), 15498046 (1) (see all 12 )
enterovirus infections
61.22
3
15170642 (1), 10459165 (1)
mimicry
59.06
13
9498628 (3), 9645372 (2), 12021103 (2), 11274421 (1) (see all 9 )
About this table Human Gene Mutation Database : GAD2 Genetic Association Database: GAD2 Human Genome Epidemiology Navigator: GAD2 (18 documents)
Medical News for GAD2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GAD2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/387 PubMed articles for GAD2 gene (see all 387
): Differential expression of GAD65 and GAD67 in human, rat, and mouse pancreatic islets. (PubMed id 8243826) 1, 3, 4 Kim J.... Baekkeskov S. (1993) Is glutamate decarboxylase 2 (GAD2) a genetic link between low birth weight and subsequent development of obesity in children? (PubMed id 15671113) 1, 3, 6 Meyre D....Froguel P. (2005) The exon-intron organization of the genes (GAD1 and GAD2) encoding two human glutamate decarboxylases (GAD67 and GAD65) suggests that they derive from a common ancestral GAD. (PubMed id 8088791) 1, 3, 4 Bu D.-F. and Tobin A.J. (1994) Cloning and primary structure of a human islet isoform of glutamic acid decarboxylase from chromosome 10. (PubMed id 1924293) 1, 3, 4 Karlsen A.E....Lernmark A. (1991) Lack of support for the association between GAD2 polymorphisms and severe human obesity. (PubMed id 16122350) 1, 3, 6 Swarbrick M.M....Vaisse C. (2005) A combination of three distinct trafficking signals mediates axonal targeting and presynaptic clustering of GAD65. (PubMed id 12356867) 1, 3, 4 Kanaani J.... Baekkeskov S. (2002) A comprehensive, statistically powered analysis of GAD2 in type 1 diabetes. (PubMed id 12196483) 1, 3, 6 Johnson G.C....Todd J.A. (2002) Polymorphisms in glutamate decarboxylase genes: analysis in schizophrenia. (PubMed id 15091314) 1, 3, 6 De Luca V....Kennedy J.L. (2004) Two human glutamate decarboxylases, 65-kDa GAD and 67-kDa GAD, are each encoded by a single gene. (PubMed id 1549570) 1, 3, 4 Bu D.-F.... Tobin A.J. (1992) GABA production by glutamic acid decarboxylase is regulated by a dynamic catalytic loop. (PubMed id 17384644) 1, 3, 4 Fenalti G....Whisstock J.C. (2007)
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Genome Databases showing GAD2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GAD2
(According to HUGE )
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Specialized Databases showing GAD2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
NIEHS-SNPs http://egp.gs.washington.edu/data/gad2/
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-- Services for GAD2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009