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Aliases & Descriptions for GABRG2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CAE2 2 , 5 ECA2 2 , 5 GEFSP3 2 , 5
Descriptions GABA(A) receptor subunit gamma-2 3 gamma-aminobutyric acid (GABA) A receptor, gamma 2 2 gamma-aminobutyric acid A receptor, gamma 2 2
Search outside databases for aliases for GABRG2 genePrevious GC identifers: GC05P161612 GC05P162002 GC05P161430 GC05P161475
Summaries for GABRG2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GABRG2 : This gene encodes a gamma-aminobutyric acid (GABA) receptor. GABA is the major inhibitoryneurotransmitter in the mammlian brain, where it acts at GABA-A receptors, which are ligand-gatedchloride channels. GABA-A receptors are pentameric, consisting of proteins from several subunitclasses: alpha, beta, gamma, delta and rho. Mutations in this gene have been associated withepilepsy and febrile seizures. Multiple transcript variants encoding different isoforms have beenidentified for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: GBRG2_HUMAN, P18507 Function : GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronalinhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel
Gene Wiki entry for GABRG2
Genomic Location for GABRG2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GABRG2 gene Entrez Gene cytogenetic band: 5q31.1-q33.1 Ensembl cytogenetic band: 5q34 HGNC cytogenetic band: 5q34 GABRG2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P161427:
(about GC identifiers )
Start:
161,427,295 bp from pter
End:
161,515,122 bp from pter
Size:
87,828 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000005.8 NT_023133.12 Proteins for GABRG2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GBRG2_HUMAN, P18507 (See
protein sequence )Recommended Name: Gamma-aminobutyric acid receptor subunit gamma-2 precursor Size : 467 amino acids; 54162 Da
Subunit : Generally pentameric. There are five types of GABA(A) receptor chains: alpha, beta, gamma,delta, and rho. Interacts with GABARAP
Subcellular location : Cell junction, synapse, postsynaptic cell membrane; Multi-pass membraneprotein. Cell membrane; Multi-pass membrane protein
Miscellaneous : This subunit carries the benzodiazepine binding site
Secondary accessions : Q6GRL6 Q9UN15
Post-translational modifications:
Palmitoylated by ZDHHC3/GODZ; which may affect presynaptic clustering and/or cell surface stability(By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_000807.2 NP_944493.2 NP_944494.1 ENSEMBL proteins: ENSP00000377510 ENSP00000349000 ENSP00000354651 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for GABRG2: Assays for GABRG2:
Protein
Domains/ Families for GABRG2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P18507 ProtoNet protein and cluster: P18507
4 Blocks protein families : IPB005437 Gamma-aminobutyric-acid A receptor gamma subunit signature IPB005439 Gamma-aminobutyric-acid A receptor gamma 2 subunit signature IPB006028 Gamma-aminobutyric acid A (GABAA) receptor signature IPB006201 Neurotransmitter-gated ion-channel UniProtKB/Swiss-Prot: GBRG2_HUMAN, P18507 Similarity : Belongs to the ligand-gated ionic channel (TC 1.A.9) family
Gene Function for GABRG2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_198903 Applied Biosystems Silencer ® siRNAs for GABRG2 Sigma-Aldrich siRNA and siRNA Panels for GABRG2 Sigma-Aldrich shRNA Panels and shRNA for GABRG2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000816                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000816                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000816  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_198903 UniProtKB/Swiss-Prot: GBRG2_HUMAN, P18507 Function : GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronalinhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel
Genatlas biochemistry entry for GABRG2 :gamma-aminobutyric acid (GABA) A receptor,ionotropic,gamma 2subunit,component of a pentamericreceptor mediating inhibitory neurotransmission,complexing with DRD5 and promoting mutuallyinhibitory functional interactions between these receptor systems,putatively involved in thephysiological dependance on alcohol,and in the maintenance of psychomotor disease states
8 MGI mutant phenotypes (inferred from 8 alleles ) (MGI details for Gabrg2) :5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
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Pathways & Interactions for GABRG2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for GABRG2 (Your Favorite Gene powered by Ingenuity) 5/42 Interacting proteins for GABRG2 (ENSP00000349000 3 ) via UniProtKB, MINT, and/or STRING (see all 42
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
About this table
Drugs & Compounds for GABRG2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for GABRG2
Compounds for GABRG2 available from Tocris Bioscience Compound Action
CAS
number Muscimol Potent GABAA agonist [2763-96-4] (+)-Bicuculline Potent GABAA antagonist [485-49-4] Indiplon Subtype-selective GABAA receptor positive allosteric modulator [325715-02-4] L-655,708 Selective for alpha5-containing GABAA receptors [130477-52-0] SR 95531 hydrobromide Selective, competitive GABAA receptor antagonist [104104-50-9]
About this table 4 Novoseek chemical compound relationships for GABRG2 gene
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Transcripts for GABRG2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_198903 Sigma-Aldrich siRNA and siRNA Panels for GABRG2 Sigma-Aldrich shRNA Panels and shRNA for GABRG2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000816 NM_198903 NM_198904
REFSEQ mRNAs for GABRG2 gene (3 alternative transcripts): NM_000816.3 NM_198903.2 NM_198904.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000816 NM_198903 NM_198904
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000816                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000816                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000816  
Additional cDNA sequence: AK123394.1 AK299640.1 AK315200.1 BC036030.1 BC052926.1 BC059389.1 BC069348.1 BC074795.2 X15376.1
7 DOTS entries : DT.312422 DT.40114896 DT.101984222 DT.402980 DT.101959107 DT.95106962 DT.120879538
24/72 AceView cDNA sequences (see all 72
):BF221573 AW949419 BM718397 AA318955 NM_198904 BM724819 BM698428 BC074795 AV725717 NM_000816 AK123394 NM_198903 BU736179 CD108432 T09226 BX280206 BC069348 BX642049 BQ716996 BM666264 AA365957 F12738 CD013896 BC036030
highest scoring ESTs for GABRG2 :H96492 X15376 AA063111 AA318955 AA365957 AA716189 AA723294 AK123394 AV727649 AW090620
Unigene Cluster for GABRG2: Gamma-aminobutyric acid (GABA) A receptor, gamma 2 Hs.7195 [show with all ESTs ] Unigene Representative Sequence: NM_198903 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for GABRG2 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b SP1 :       -     -                         SP2 :       -     -             -             SP3 :       -     -     -         -             SP4 :                       -             SP5 :           -                        
About this scheme ECgene alternative splicing isoforms for GABRG2 3 Ensembl transcripts including schematic representations : ENST00000393933
ENST00000356592
ENST00000361925
Expression for GABRG2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GABRG2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GABRG2 1 / 2 / 3
5 probe-sets matching GABRG2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGGACTTTTASOURCE GeneReport for Unigene cluster: Hs.7195 Expression variation in blood from EXPOLDB for GABRG2
Orthologs for GABRG2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GABRG2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for GABRG2 ENSEMBL Gene Tree for GABRG2 Paralogs for GABRG2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GABRG2 gene GABRE 2 GABRG1 2 GABRG3 2
SNPs/Variants for GABRG2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GABRG2 (up to first 250kb)
Disorders & Mutations for GABRG2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 137164 disorders : 604233 607681 611277 607208 UniProtKB/Swiss-Prot: GBRG2_HUMAN, P18507
Defects in GABRG2 are the cause of childhood absence epilepsy type 2 (ECA2) [MIM:607681].ECA2 is a subtype of idiopathic generalized epilepsy (IGE) characterized by an onset at age 6-7years, frequent absence seizures (several per day) and bilateral, synchronous, symmetric 3-Hzspike waves on EEG. During adolescence, tonic-clonic and myoclonic seizures develop. Someindividuals manifest ECA2 occurring in combination with febrile convulsions [MIM:611277] Defects in GABRG2 are the cause of familial febrile convulsions type 8 (FEB8)[MIM:611277]. A febrile convulsion is defined as a seizure event in infancy or childhood, usuallyoccurring between 6 months and 6 years of age, associated with fever but without any evidence ofintracranial infection or defined pathologic or traumatic cause. Febrile convulsions affect 5-12%of infants and children up to 6 years of age. There is epidemiological evidence that febrileseizures are associated with subsequent afebrile and unprovoked seizures in 2% to 7% of patients Defects in GABRG2 are the cause of generalized epilepsy with febrile seizures plus type 3(GEFS+3) [MIM:604233]. Generalized epilepsy with febrile seizures-plus refers to a rare autosomaldominant, familial condition with incomplete penetrance and large intrafamilial variability.Patients display febrile seizures persisting sometimes beyond the age of 6 years and/or a varietyof afebrile seizure types. GEFS+ is a disease combining febrile seizures, generalized seizuresoften precipitated by fever at age 6 years or more, and partial seizures, with a variable degreeof severity Defects in GABRG2 are a cause of severe myoclonic epilepsy in infancy (SMEI) [MIM:607208];also called Dravet syndrome. SMEI is a rare disorder characterized by generalized tonic, clonic,and tonic-clonic seizures that are initially induced by fever and begin during the first year oflife. Later, patients also manifest other seizure types, including absence, myoclonic, and simpleand complex partial seizures. Psychomotor development delay is observed around the second year oflife. SMEI is considered to be the most severe phenotype within the spectrum of generalizedepilepsies with febrile seizures-plus
10/13 Novoseek disease relationships for GABRG2 gene (see all 13
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
epilepsy generalized
92.06
16
19065515 (2), 14738422 (2), 12759178 (1), 18566737 (1) (see all 12 )
seizures febrile
91.08
24
12759178 (2), 19065515 (2), 14738422 (2), 16924025 (2) (see all 17 )
childhood absence epilepsy
86.93
7
12759178 (1), 12672902 (1), 16924025 (1), 17008177 (1) (see all 5 )
dravet syndrome
84.08
1
12773292 (1)
epilepsies myoclonic
79.44
3
12694927 (1), 17008177 (1)
familial benign neonatal convulsions
70.98
1
11579435 (1)
epilepsy, idiopathic generalized
70.78
1
17162195 (1)
epilepsy frontal lobe
67.18
3
17008177 (1), 11579435 (1)
myoclonic epilepsy juvenile
66.70
4
17008177 (1), 16302874 (1), 8739126 (1)
epilepsy
65.26
12
16806831 (3), 15955415 (1), 18175077 (1), 17008177 (1) (see all 8 )
About this table Human Gene Mutation Database : GABRG2 Genetic Association Database: GABRG2 Human Genome Epidemiology Navigator: GABRG2 (24 documents)
Medical News for GABRG2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GABRG2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/99 PubMed articles for GABRG2 gene (see all 99
): Haplotype association between GABAA receptor gamma2 subunit gene (GABRG2) and methamphetamine use disorder. (PubMed id 15772696) 1, 3, 6 Nishiyama T....Ozaki N. (2005) Mutation screen of GABRA1, GABRB2 and GABRG2 genes in Japanese patients with absence seizures. (PubMed id 15955415) 1, 3, 6 Ito M....Ohtsuka Y. (2005) Association analysis of gamma 2 subunit of gamma- aminobutyric acid type A receptor polymorphisms with febrile seizures. (PubMed id 12672902) 1, 3, 6 Chou I.C....Tsai C.H. (2003) Failure to find causal mutations in the GABA(A)-receptor gamma2 subunit (GABRG2) gene in Japanese febrile seizure patients. (PubMed id 12759178) 1, 3, 6 Nakayama J....Arinami T. (2003) No evidence of GABRG2 mutations in severe myoclonic epilepsy of infancy. (PubMed id 12694927) 1, 3, 6 Madia F....Zara F. (2003) Complete genomic sequence of 195 Kb of human DNA containing the gene GABRG2. (PubMed id 11328646) 1, 3, 4 Jiang S.... Yang H. (2000) Association analysis of GABAAbeta2 and gamma2 gene polymorphisms with event-related prefrontal activity in man. (PubMed id 11140951) 1, 3, 6 Winterer G....Sander T. (2000) Genetic investigation of chromosome 5q GABAA receptor subunit genes in schizophrenia. (PubMed id 16172613) 1, 3, 6 Petryshen T.L....Sklar P. (2005) First genetic evidence of GABA(A) receptor dysfunction in epilepsy: a mutation in the gamma2-subunit gene. (PubMed id 11326274) 1, 3, 4 Baulac S....LeGuern E. (2001) Association studies of neurotransmitter gene polymorphisms in alcoholic Caucasians. (PubMed id 15542698) 3, 6 Foley P.F....Dodd P.R. (2004)
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Genome Databases showing GABRG2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GABRG2
(According to HUGE )
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Specialized Databases showing GABRG2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Protein Spotlight http://www.expasy.org/spotlight/back_issues/sptlt056.shtml
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-- Services for GABRG2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GABRG2:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009