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Aliases & Descriptions for GABRE
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases OTTHUMP00000025892 2
Descriptions GABA(A) receptor 2 GABA(A) receptor subunit epsilon 3 gamma-aminobutyric acid (GABA) A receptor, epsilon 2 gamma-aminobutyric acid A receptor, epsilon 1
Search outside databases for aliases for GABRE genePrevious GC identifers: GC0XM145456 GC0XM147779 GC0XM148869 GC0XM149739 GC0XM150792
Summaries for GABRE (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GABRE : The product of this gene belongs to the ligand-gated ionic channel (TC 1.A.9) family. It encodesthe gamma-aminobutyric acid (GABA) A receptor which is a multisubunit chloride channel thatmediates the fastest inhibitory synaptic transmission in the central nervous system. This geneencodes an epsilon subunit. It is mapped to chromosome Xq28 in a cluster comprised of genesencoding alpha 3, beta 4 and theta subunits of the same receptor. Alternatively spliced transcriptvariants have been identified, but only one is thought to encode a protein. [provided by RefSeq] UniProtKB/Swiss-Prot: GBRE_HUMAN, P78334 Function : GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronalinhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel
Gene Wiki entry for GABRE
Genomic Location for GABRE
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GABRE gene Entrez Gene cytogenetic band: Xq28 Ensembl cytogenetic band: Xq28 HGNC cytogenetic band: Xq28 GABRE Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XM150873:
(about GC identifiers )
Start:
150,872,252 bp from pter
End:
150,893,807 bp from pter
Size:
21,556 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000023.9 NT_011726.13 Proteins for GABRE
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GBRE_HUMAN, P78334 (See
protein sequence )Recommended Name: Gamma-aminobutyric acid receptor subunit epsilon precursor Size : 506 amino acids; 57972 Da
Subunit : Generally pentameric. Associates with alpha and beta subunits
Subcellular location : Cell junction, synapse, postsynaptic cell membrane; Multi-pass membraneprotein. Cell membrane; Multi-pass membrane protein
Secondary accessions : O15345 O15346 Q99520
REFSEQ proteins (4 alternative transcripts):
NP_004952.2 NP_068819.2 NP_068822.1 NP_068830.1 ENSEMBL proteins: ENSP00000359353 ENSP00000352321 ENSP00000377491 ENSP00000359350 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for GABRE: Assays for GABRE:
Protein
Domains/ Families for GABRE(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P78334 ProtoNet protein and cluster: P78334
3 Blocks protein families : IPB006028 Gamma-aminobutyric acid A (GABAA) receptor signature IPB006201 Neurotransmitter-gated ion-channel IPB008099 Gamma-aminobutyric-acid A receptor epsilon subunit signature UniProtKB/Swiss-Prot: GBRE_HUMAN, P78334 Similarity : Belongs to the ligand-gated ionic channel (TC 1.A.9) family
Gene Function for GABRE
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_021984 Applied Biosystems Silencer ® siRNAs for GABRE Sigma-Aldrich siRNA and siRNA Panels for GABRE Sigma-Aldrich shRNA for GABRE Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_004961                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_004961                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_004961  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004961 UniProtKB/Swiss-Prot: GBRE_HUMAN, P78334 Function : GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronalinhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel
Genatlas biochemistry entry for GABRE :gamma-aminobutyric acid (GABA) A receptor,ionotropic,epsilon,predominantly expressed in adultbrain,subunit,component of a pentameric receptor mediating inhibitory neurotransmission,clusteredwith GABRA3 and GABRB4 5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for GABRE
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for GABRE (Your Favorite Gene powered by Ingenuity) 5/18 Interacting proteins for GABRE (ENSP00000359353 3 ) via UniProtKB, MINT, and/or STRING (see all 18
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for GABRE (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for GABRE
Compounds for GABRE available from Tocris Bioscience Compound Action
CAS
number Muscimol Potent GABAA agonist [2763-96-4] (+)-Bicuculline Potent GABAA antagonist [485-49-4] Indiplon Subtype-selective GABAA receptor positive allosteric modulator [325715-02-4] L-655,708 Selective for alpha5-containing GABAA receptors [130477-52-0] SR 95531 hydrobromide Selective, competitive GABAA receptor antagonist [104104-50-9]
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Transcripts for GABRE(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_021984 Sigma-Aldrich siRNA and siRNA Panels for GABRE Sigma-Aldrich shRNA for GABRE Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004961
REFSEQ mRNAs for GABRE gene (4 alternative transcripts): NM_004961.3 NM_021984.2 NM_021987.2 NM_021990.2 NM_004961
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_004961                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_004961                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_004961  
Additional cDNA sequence: AF086385.1 AK299174.1 AK303072.1 BC026337.1 BC047108.1 BC059376.1 CR591394.1 U66661.1 Y07637.1 Y09765.1
11 DOTS entries : DT.443863 DT.95350380 DT.91825239 DT.100816070 DT.91755826 DT.97833425 DT.115945 DT.95107482 DT.91750087 DT.91755827 DT.121289670
24/125 AceView cDNA sequences (see all 125
):U66661 AA954089 AI682740 BX478724 AA347289 Y09765 NM_021984 CR591394 BU732085 AI432632 AA855126 AI963395 U92285 CD671953 CA310783 NM_021987 BM678523 AI400573 AI334197 BQ016181 AI824213 C00867 CD369824 AI279924
highest scoring ESTs for GABRE :Y09765 AL603607 BG714934 BG716264 BI667764 CN481624 CN484232 AA299532 AA321214 AA347289
Unigene Cluster for GABRE: Gamma-aminobutyric acid (GABA) A receptor, epsilon Hs.22785 [show with all ESTs ] Unigene Representative Sequence: BC026337 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for GABRE (see all 10
) ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c ^ 14a · 14b SP1 :       -   -   -     -   -             -   -   -   -           -       SP2 :       -     -     -   -                                   SP3 :                         -     -                       SP4 :                                             -       SP5 :                                   -                
About this scheme ECgene alternative splicing isoforms for GABRE 4 Ensembl transcripts including schematic representations : ENST00000370328
ENST00000359363
ENST00000393914
ENST00000370325
Expression for GABRE
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GABRE expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GABRE 1 / 2 / 3
3 probe-sets matching GABRE gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCCCAATGCTSOURCE GeneReport for Unigene cluster: Hs.22785 Expression variation in blood from EXPOLDB for GABRE
UniProtKB/Swiss-Prot: GBRE_HUMAN, P78334 Tissue specificity : Expressed in many tissues. Highest levels of expression in adult heart andplacenta
Orthologs for GABRE
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GABRE gene from 5/6 species (see all 6
)
About this table Species with no ortholog for GABRE ENSEMBL Gene Tree for GABRE Paralogs for GABRE (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GABRE gene GABRG2 2 GABRG1 2 GABRG3 2
SNPs/Variants for GABRE (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GABRE (up to first 250kb)
Disorders & Mutations for GABRE
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 300093 Human Genome Epidemiology Navigator: GABRE (4 documents)
Medical News for GABRE (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GABRE (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/20 PubMed articles for GABRE gene (see all 20
):
Search for GABRE
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing GABRE
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GABRE
(According to HUGE )
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--
Specialized Databases showing GABRE (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for GABRE (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GABRE:
Tocris compounds for GABRE
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