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Aliases & Descriptions for GABRB3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ECA5 2 , 5 MGC9051 2
Descriptions GABA(A) receptor beta-3 subunit 2 GABA(A) receptor subunit beta-3 3 GABA-A receptor beta-3 subunit 2 GABA-alpha receptor beta-2 subunit 2 GABAA receptor beta-3 subunit 2 gamma-aminobutyric acid (GABA) A receptor, beta 3 2 gamma-aminobutyric acid A receptor, beta 3 1
Search outside databases for aliases for GABRB3 genePrevious GC identifers: GC15M022994 GC15M019538 GC15M024209 GC15M024338
Summaries for GABRB3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GABRB3 : This gene encodes a member of the ligand-gated ionic channel family. The encoded protein is one ofat least 13 distinct subunits of a multisubunit chloride channel that serves as the receptor forgamma-aminobutyric acid, the major inhibitory transmitter of the nervous system. This gene islocated on the long arm of chromosome 15 in a cluster with two genes encoding related subunits ofthe family. Mutations in this gene may be associated with the pathogenesis of Angelman syndrome,Prader-Willi syndrome, and autism. Alternatively spliced transcript variants encoding isoformswith distinct signal peptides have been described. [provided by RefSeq] UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472 Function : GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronalinhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel
Gene Wiki entry for GABRB3
Genomic Location for GABRB3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GABRB3 gene Entrez Gene cytogenetic band: 15q11.2-q12 Ensembl cytogenetic band: 15q12 HGNC cytogenetic band: 15q11.2-q12 GABRB3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15M024342:
(about GC identifiers )
Start:
24,339,786 bp from pter
End:
24,767,329 bp from pter
Size:
427,544 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000015.8 NT_026446.13 Proteins for GABRB3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472 (See
protein sequence )Recommended Name: Gamma-aminobutyric acid receptor subunit beta-3 precursor Size : 473 amino acids; 54116 Da
Subunit : Binds UBQLN1 (By similarity). Generally pentameric. There are five types of GABA(A)receptor chains: alpha, beta, gamma, delta, and rho
Subcellular location : Cell junction, synapse, postsynaptic cell membrane; Multi-pass membraneprotein. Cell membrane; Multi-pass membrane protein
Secondary accessions : Q14352 Q96FM5Alternative splicing : 2 isoforms : P28472-1 P28472-2 (Isoforms differ in their signal region)
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000805.1 NP_068712.1 ENSEMBL proteins: ENSP00000308725 ENSP00000299267 ENSP00000372479 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for GABRB3: Assays for GABRB3:
Protein
Domains/ Families for GABRB3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P28472 ProtoNet protein and cluster: P28472
3 Blocks protein families : IPB002289 Gamma-aminobutyric-acid A receptor beta subunit signature IPB006028 Gamma-aminobutyric acid A (GABAA) receptor signature IPB006201 Neurotransmitter-gated ion-channel UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472 Similarity : Belongs to the ligand-gated ionic channel (TC 1.A.9) family
Gene Function for GABRB3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_021912 Applied Biosystems Silencer ® siRNAs for GABRB3 Sigma-Aldrich siRNA and siRNA Panels for GABRB3 Sigma-Aldrich shRNA for GABRB3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000814                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000814                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_000814  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_021912 UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472 Function : GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronalinhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel
Genatlas biochemistry entry for GABRB3 :gamma-aminobutyric acid (GABA) A receptor,ionotropic,beta 3,subunit,component of a pentamericreceptor mediating inhibitory neurotransmission putatively involved in epileptic seizures inAngelman syndrome (ANCR),unlikely to be involved in autism
13 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Gabrb3) :5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for GABRB3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for GABRB3 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for GABRB3 5/28 Interacting proteins for GABRB3 (ENSP00000372479 3 ) via UniProtKB, MINT, and/or STRING (see all 28
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for GABRB3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for GABRB3
Compounds for GABRB3 available from Tocris Bioscience Compound Action
CAS
number Muscimol Potent GABAA agonist [2763-96-4] (+)-Bicuculline Potent GABAA antagonist [485-49-4] Indiplon Subtype-selective GABAA receptor positive allosteric modulator [325715-02-4] L-655,708 Selective for alpha5-containing GABAA receptors [130477-52-0] SR 95531 hydrobromide Selective, competitive GABAA receptor antagonist [104104-50-9]
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Transcripts for GABRB3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_021912 Sigma-Aldrich siRNA and siRNA Panels for GABRB3 Sigma-Aldrich shRNA for GABRB3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000814 NM_021912
REFSEQ mRNAs for GABRB3 gene (2 alternative transcripts): NM_000814.4 NM_021912.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000814 NM_021912
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000814                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000814                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_000814  
Additional cDNA sequence: AK056018.1 AK095011.1 AK295167.1 AK302822.1 AK315311.1 BC010641.1 CR597025.1 M82919.1
5 DOTS entries : DT.114079 DT.97860651 DT.92419326 DT.101977158 DT.121034552
24/179 AceView cDNA sequences (see all 179
):AW593469 BX340796 T17052 BM711834 BE670943 AW138113 AI206318 CB162957 BC010641 BU733771 AI915876 BX095863 AI638301 BE045632 AW293786 AW294342 NM_021912 BQ269006 BX332587 CR597025 BE463799 BE673640 AI811282 BX366284
highest scoring ESTs for GABRB3 :AL120032 AA129127 AA129128 AA317685 AA332100 AA350717 AA484709 AA987326 AI138367 AI206318
Unigene Cluster for GABRB3: Gamma-aminobutyric acid (GABA) A receptor, beta 3 Hs.302352 [show with all ESTs ] Unigene Representative Sequence: NM_000814 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for GABRB3 ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14 SP1 :         -   -         -   -     -             SP2 :         -   -   -       -   -     -             SP3 :                                     SP4 :                                     SP5 :                                    
About this scheme ECgene alternative splicing isoforms for GABRB3 3 Ensembl transcripts including schematic representations : ENST00000311550
ENST00000299267
ENST00000383015
Expression for GABRB3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GABRB3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GABRB3 1 / 2 / 3
10 probe-sets matching GABRB3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTAAATCTGTSOURCE GeneReport for Unigene cluster: Hs.302352 Expression variation in blood from EXPOLDB for GABRB3
Orthologs for GABRB3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GABRB3 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for GABRB3 ENSEMBL Gene Tree for GABRB3 Paralogs for GABRB3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GABRB3 gene GABRB2 2 GABRB1 2
SNPs/Variants for GABRB3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GABRB3 (up to first 250kb)
Disorders & Mutations for GABRB3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 137192 UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472
Defects in GABRB3 are a cause of chonic insomnia. Insomnia is characterized by impairmentof the ability to initiate or maintain sleep. This may occur as a primary disorder or inassociation with another medical or psychiatric condition Defects in GABRB3 are the cause of childhood absence epilepsy type 5 (ECA5) [MIM:612269].ECA5 is a subtype of idiopathic generalized epilepsy (IGE) characterized by an onset at age 6-7years, frequent absence seizures (several per day) and bilateral, synchronous, symmetric 3-Hzspike waves on EEG. During adolescence, tonic-clonic and myoclonic seizures develop. Absenceseizures may either remit or persist into adulthood
10/11 Novoseek disease relationships for GABRB3 gene (see all 11
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
angelman syndrome
92.74
14
10515160 (2), 8389098 (2), 10514831 (1), 8094063 (1) (see all 10 )
prader-willi syndrome
78.41
2
8188218 (1), 1664410 (1)
childhood absence epilepsy
72.08
3
15498372 (1), 18514161 (1), 12194792 (1)
autistic
66.26
6
17598645 (2), 12491987 (2), 12092907 (1), 11920158 (1)
rett syndrome
53.32
1
17339270 (1)
pervasive developmental disorder
46.38
1
11785506 (1)
cleft palate
39.61
6
18452349 (3), 8389469 (1)
epilepsy
32.37
1
10515160 (1)
chromosomal aberrations
25.89
1
12491987 (1)
alcoholism
21.28
3
15296817 (2)
About this table 1 PharmGKB disease relationship for GABRB3 gene About this table Human Gene Mutation Database : GABRB3 Genetic Association Database: GABRB3 Human Genome Epidemiology Navigator: GABRB3 (24 documents)
Medical News for GABRB3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GABRB3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/109 PubMed articles for GABRB3 gene (see all 109
): Association between a GABRB3 polymorphism and autism. (PubMed id 11920158) 1, 3, 6, 7 Buxbaum J.D....Vitale R. (2002) Alcohol-related expectancies are associated with the D2 dopamine receptor and GABAA receptor beta3 subunit genes. (PubMed id 15296817) 1, 3, 6 Young R.M....Noble E.P. (2004) The GABAA receptor beta 3 subunit gene: characterization of a human cDNA from chromosome 15q11q13 and mapping to a region of conserved synteny on mouse chromosome 7. (PubMed id 1664410) 1, 3, 4 Wagstaff J.... Lalande M. (1991) Hyperglycosylation and reduced GABA currents of mutated GABRB3 polypeptide in remitting childhood absence epilepsy. (PubMed id 18514161) 1, 3, 4 Tanaka M....Delgado-Escueta A.V. (2008) A strong promoter element is located between alternative exons of a gene encoding the human gamma-aminobutyric acid-type A receptor beta 3 subunit (GABRB3). (PubMed id 8382702) 1, 3, 4 Kirkness E.F. and Fraser C.M. (1993) Localization of the gene encoding the GABAA receptor beta 3 subunit to the Angelman/Prader-Willi region of human chromosome 15. (PubMed id 1714232) 1, 3, 4 Wagstaff J.... Lalande M. (1991) ADH1B*1, ADH1C*2, DRD2 (-141C Ins), and 5-HTTLPR are associated with alcoholism in Mexican American men living in Los Angeles. (PubMed id 15318112) 1, 3, 6 Konishi T....Wan Y.J. (2004) Identification of significant association and gene-gene interaction of GABA receptor subunit genes in autism. (PubMed id 16080114) 3, 6 Ma D.Q....Pericak-Vance M.A. (2005) Polymorphisms of the dopamine D2 receptor, serotonin transporter, and GABA(A) receptor beta(3) subunit genes and alcoholism in Mexican-Americans. (PubMed id 15066703) 3, 6 Konishi T....Wan Y.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004)
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Genome Databases showing GABRB3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GABRB3
(According to HUGE )
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Specialized Databases showing GABRB3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Protein Spotlight http://www.expasy.org/spotlight/back_issues/sptlt056.shtml
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-- Services for GABRB3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009