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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

GABRB3 Gene

protein-coding   GIFtS: 70
GCID: GC15M026788

gamma-aminobutyric acid (GABA) A receptor, beta 3

 Explore 34 diseases affiliated with
GABRB3 via our new
 Human Malady Compendium 
Biological research products
for GABRB3
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Gamma-Aminobutyric Acid (GABA) A Receptor, Beta 31 2     GABA-Alpha Receptor Beta-2 Subunit2
ECA52 5     GABAA Receptor Beta-3 Subunit2
GABA(A) Receptor Beta-3 Subunit2     Gamma-Aminobutyric Acid Receptor Subunit Beta-32
GABA(A) Receptor, Beta 32     GABA(A) Receptor Subunit Beta-33

External Ids:    HGNC: 40831   Entrez Gene: 25622   Ensembl: ENSG000001662067   OMIM: 1371925   UniProtKB: P284723   

Export aliases for GABRB3 gene to outside databases

Previous GC identifers: GC15M022994 GC15M019538 GC15M024209 GC15M024338 GC15M024342 GC15M004917


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for GABRB3:
This gene encodes a member of the ligand-gated ionic channel family. The encoded protein is one of at least 13 distinct
subunits of a multisubunit chloride channel that serves as the receptor for gamma-aminobutyric acid, the major
inhibitory transmitter of the nervous system. This gene is located on the long arm of chromosome 15 in a cluster with
two genes encoding related subunits of the family. Mutations in this gene may be associated with the pathogenesis of
Angelman syndrome, Prader-Willi syndrome, and autism. Alternatively spliced transcript variants encoding distinct
isoforms have been described. (provided by RefSeq, Jul 2010)

UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472
Function: GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding
to the GABA/benzodiazepine receptor and opening an integral chloride channel

summary for GABRB3:
GABAA receptors are members of the cys-loop family of ligand-gated ion channels, responsible for mediating
the inhibitory effects of GABA alongside GABAB and GABAC receptors. They are pentameric proteins, consisting
of 5 subunits belonging to different families (alpha1-6, beta1-3, gamma1-3, delta, pi, epsilon, rho, theta).
The most abundant GABAA receptor in the mammalian brain consist of two copies each of alpha1 and beta2 with
a single gamma2 subunits. GABAA receptors contain an integral chloride channel, and have modulatory sites
for benzodiazepines, barbiturates, neurosteroids and ethanol.

Gene Wiki entry for GABRB3


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000015.9  NC_018926.1  NT_026446.14  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the GABRB3 gene promoter:
         NRSF form 1   AP-4   NRSF form 2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidGABRB3 promoter sequence
   Search SABiosciences Chromatin IP Primers for GABRB3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GABRB3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q12   Ensembl cytogenetic band:  15q12   HGNC cytogenetic band: 15q12

GABRB3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GABRB3 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15M026788:  view genomic region     (about GC identifiers)

Start:
26,788,693 bp from pter      End:
27,184,686 bp from pter
Size:
395,994 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472 (See protein sequence)
Recommended Name: Gamma-aminobutyric acid receptor subunit beta-3 precursor  
Size: 473 amino acids; 54116 Da
Subunit: Binds UBQLN1 (By similarity). Generally pentameric. There are five types of GABA(A) receptor chains: alpha,
beta, gamma, delta, and rho
Subcellular location: Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein. Cell membrane;
Multi-pass membrane protein
Secondary accessions: B7Z2W1 H7BYV8 Q14352 Q96FM5
Alternative splicing: 3 isoforms:  P28472-1   P28472-2   P28472-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for GABRB3: NX_P28472

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P28472

  • GABRB3 Protein expression data from MOPED and PaxDb:    About this image 
    GABRB3 Protein Expression
    REFSEQ proteins (4 alternative transcripts): 
    NP_000805.1  NP_001178249.1  NP_001178250.1  NP_068712.1  

    ENSEMBL proteins: 
     ENSP00000308725   ENSP00000442408   ENSP00000299267   ENSP00000383049   ENSP00000452041  
     ENSP00000439169   ENSP00000451077   ENSP00000452272   ENSP00000452159   ENSP00000451430  
    Reactome Protein details: P28472
    Human Recombinant Protein Products for GABRB3: 
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    Novus Biologicals GABRB3 Protein
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    Browse Proteins at Uscn

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0005887integral to plasma membrane TAS1664410
    GO:0016021integral to membrane ----
    GO:0030054cell junction IEA--
    GO:0034707chloride channel complex IEA--

    GABRB3 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    GABRB3 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR002289 GABAAb_rcpt
     IPR018000 Neurotransmitter_ion_chnl_CS
     IPR006028 GABAA_rcpt
     IPR006201 Neur_channel
     IPR006202 Neur_chan_lig-bd

    Graphical View of Domain Structure for InterPro Entry P28472

    ProtoNet protein and cluster: P28472

    3 Blocks protein families:
    IPB002289 Gamma-aminobutyric-acid A receptor beta subunit signature
    IPB006028 Gamma-aminobutyric acid A (GABAA) receptor signature
    IPB006201 Neurotransmitter-gated ion-channel


    UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472
    Similarity: Belongs to the ligand-gated ion channel (TC 1.A.9) family. Gamma-aminobutyric acid receptor (TC 1.A.9.5)
    subfamily. GABRB3 sub-subfamily


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: GBRB3_HUMAN, P28472
    Function: GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding
    to the GABA/benzodiazepine receptor and opening an integral chloride channel

         Genatlas biochemistry entry for GABRB3:
    gamma-aminobutyric acid (GABA) A receptor,ionotropic,beta 3,subunit,component of a pentameric receptor mediating
    inhibitory neurotransmission putatively involved in epileptic seizures in Angelman syndrome (ANCR),unlikely to be
    involved in autism

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004890GABA-A receptor activity IEA--
    GO:0005230extracellular ligand-gated ion channel activity IEA--
    GO:0005254chloride channel activity IEA--
         
    GABRB3 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for GABRB3:
     Decreased cell number, increas 

         11 MGI mutant phenotypes (inferred from 5 alleles(MGI details for Gabrb3):
     behavior/neurological  craniofacial  digestive/alimentary  growth/size  hearing/vestibular/ear 
     mortality/aging  nervous system  no phenotypic analysis  normal  reproductive system 
     skeleton 

    GABRB3 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-outs for GABRB3: Gabrb3tm2.2Geh Gabrb3tm1Geh
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for GABRB3 

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    SwitchGear 3'UTR luciferase reporter plasmidGABRB3 3' UTR sequence
    Inhib. RNA
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GABRB3


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/11 super-pathways (see all 11About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1GABA A receptor activation
    GABA A receptor activation1.00
    Synaptic Neurotransmission: GABAergic Inhibition0.45
    Ligand-gated ion channel transport0.48
    GABA signaling in brain0.26
    2Transmission across Chemical Synapses
    Transmission across Chemical Synapses1.00
    Neuronal System0.67
    Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell0.72
    3Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling
    Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling1.00
    Neurophysiological process_Glutamate regulation of Dopamine D1A receptor signaling0.98
    4G Protein Signaling Pathways
    Signal transduction PKA signaling0.23
    Signal transduction_PKA signaling0.23
    5Ion channel transport
    Ion channel transport1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    3 EMD Millipore Pathways for GABRB3
        Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling
    GABA signaling in brain
    Signal transduction PKA signaling

    1 R&D Systems Pathway for GABRB3
        Synaptic Neurotransmission: GABAergic Inhibition

    2 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for GABRB3
        Sperm Motility
    Akt Signaling

    1 Tocris Bioscience Pathway for GABRB3
        Akt Pathway

    2 GeneGo (Thomson Reuters) Pathways for GABRB3
        Signal transduction PKA signaling
    Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling

    5/8        Reactome Pathways for GABRB3 (see all 8)
        GABA A receptor activation
    Ligand-gated ion channel transport
    Transmission across Chemical Synapses
    Ion channel transport
    Neuronal System


    1         Kegg Pathway  (Kegg details for GABRB3):
        Neuroactive ligand-receptor interaction


    GABRB3 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for GABRB3

    STRING Interaction Network Preview (showing 5 interactants - click image to see 18)

    5/18 Interacting proteins for GABRB3 (P284723 ENSP000002992674) via UniProtKB, MINT, STRING, and/or I2D (see all 18)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ARFGEF2Q9Y6D53, ENSP000003609854I2D: score=1 STRING: ENSP00000360985
    GNB2L1P632443, ENSP000003660134I2D: score=1 STRING: ENSP00000366013
    PRKACAP176123, ENSP000003095914I2D: score=1 STRING: ENSP00000309591
    PPP2CAP677753, ENSP000004184474I2D: score=1 STRING: ENSP00000418447
    UBCP0CG483, ENSP000003448184I2D: score=1 STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006810transport TAS1664410
    GO:0007165signal transduction TAS1664410
    GO:0007268synaptic transmission TAS--
    GO:0007605sensory perception of sound IEA--
    GO:0034220ion transmembrane transport TAS--

    GABRB3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    GABRB3 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Compounds for GABRB3 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    MuscimolPotent GABAA agonist[2763-96-4]
    (+)-BicucullinePotent GABAA antagonist[485-49-4]
    IndiplonSubtype-selective GABAA receptor positive allosteric modulator[325715-02-4]
    L-655,708 Selective for alpha5-containing GABAA receptors[130477-52-0]
    SR 95531 hydrobromide Selective, competitive GABAA receptor antagonist [104104-50-9]

    2 HMDB Compounds for GABRB3    About this table
    CompoundSynonyms CAS #PubMed Ids
    ChlorineCl2 (see all 13)16887-00-6--
    Gamma-Aminobutyric acid3-Carboxypropylamine (see all 27)56-12-2--

    10/27 DrugBank Compounds for GABRB3 (see all 27)    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    PiperazineDiethylenediamine (see all 8)110-85-0targetagonist11156579 17139284 17016423 10592235
    Ivermectin22,23-Dihydroxy-avermectin B (see all 3)70288-86-7targetagonist12421359 17016423 10592235
    Lorazepam(+/-)-Lorazepam (see all 3)846-49-1targetpotentiator20138190 18384456 11752090
    Adinazolam-- 37115-32-5targetpotentiator6320036 6148400
    Chlordiazepoxide-- 58-25-3targetpotentiator18384456 11752090
    Clobazam-- 22316-47-8targetpotentiator18384456 11752090
    ClonazepamChlonazepam (see all 2)1622-61-3targetpotentiator18384456 11752090
    Clorazepate-- 23887-31-2targetpotentiator18384456 11752090
    Diazepam-- 439-14-5targetpotentiator18384456 11752090
    Estazolam-- 29975-16-4targetpotentiator639854 2889803

    1 Novoseek chemical compound relationship for GABRB3 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    gaba 74.5 37 15498372 (2), 8188218 (2), 18514161 (2), 17206404 (2) (see all 20)

    Search CenterWatch for drugs/clinical trials and news about GABRB3 / GBRB3 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for GABRB3 gene (4 alternative transcripts): 
    NM_000814.5  NM_001191320.1  NM_001191321.1  NM_021912.4  

    Unigene Cluster for GABRB3:

    Gamma-aminobutyric acid (GABA) A receptor, beta 3
    Hs.302352  [show with all ESTs]
    Unigene Representative Sequence: NM_000814
    14 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000311550(uc021sgg.1 uc021sgh.1 uc001zaz.3 uc001zba.3)
    ENST00000541819(uc001zbb.3) ENST00000299267 ENST00000400188 ENST00000555632
    ENST00000545868 ENST00000554556 ENST00000557765 ENST00000555094 ENST00000555811
    ENST00000556636 ENST00000556166(uc001zbc.3) ENST00000557641 ENST00000554722


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    Additional cDNA sequence: 

    AK056018.1 AK095011.1 AK295167.1 AK302822.1 AK315311.1 BC010641.1 M82919.1 

    5 DOTS entries:

    DT.114079  DT.97860651  DT.92419326  DT.101977158  DT.121034552 

    24/179 AceView cDNA sequences (see all 179):

    BX095863 CR597025 T17052 NM_021912 F04698 AW593469 BX340796 CB162957 
    NM_000814 BF432823 AI208093 Z45038 BC010641 BM021465 BE673640 BF592810 
    AI693153 BM711834 AI206318 AI915876 F03168 AI638301 BX366284 AA826370 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for GABRB3    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14
    SP1:                          -     -                       -     -           -                                 
    SP2:                          -     -     -                 -     -           -                                 
    SP3:                                                                                                            
    SP4:                                                                                                            
    SP5:                                                                                                            


    ECgene alternative splicing isoforms for GABRB3

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    GABRB3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AAAAAACAGC
    GABRB3 Expression
    About this image

    GABRB3 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    Stem Cell Differentiation: 9 LifeMap Cells 
    NameCategory
    Induced pluripotent stem cell line 201B6 (Induced Pluripotent Stem Cell)Early Embryo, Fibroblast
    VUB14 (Embryonic Stem Cell)Early Embryo, Inner Cell Mass
    FES22 (Embryonic Stem Cell)Early Embryo, Inner Cell Mass
    FES29 (Embryonic Stem Cell)Early Embryo, Inner Cell Mass
    VAL-9 (Embryonic Stem Cell)Early Embryo, Inner Cell Mass
    Intermediate limb mesenchymal cells (ILM cells) (Primary Cell)Bone, Cartilage, Limb
    ES04(HES-4) (Embryonic Stem Cell)Early Embryo, Inner Cell Mass
    Line H9 (WA09) (Embryonic Stem Cell)Early Embryo, Inner Cell Mass
    Matrigel embedded cells (Derivation of cardio...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See GABRB3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for GABRB3

    SOURCE GeneReport for Unigene cluster: Hs.302352
        SABiosciences Expression via Pathway-Focused PCR Arrays including GABRB3: 
              Neurotransmitter Receptors in human mouse rat
              GABA & Glutamate in human mouse rat
              Embryonic Stem Cells in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for GABRB3 gene from 5/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves GABRB31 gamma-aminobutyric acid (GABA) A receptor, beta 3 82.73(n)
    91.97(a)
      396290  NM_205346.2  NP_990677.1 
    lizard
    (Anolis carolinensis)
    Reptilia GABRB36
    --
    90(a)
    1 ↔ 1
    3(110242994-110271459)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC5669221 gamma-aminobutyric acid receptor subunit beta-3-like 74.86(n)
    85.9(a)
      566922  XM_002662494.2  XP_002662540.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Lcch31 , 3 GABA-A receptor3
    Ligand-gated chloride channel homolog 31
    49(a)
    (best of 7)3
    54.07(n)1
    50.32(a)1
      14A13
    325541  NM_206746.11  NP_996469.11 
    worm
    (Caenorhabditis elegans)
    Secernentea gab-11 , 3 GABA receptor3
    Protein GAB-11
    43(a)
    (best of 19)3
    52.41(n)1
    50.47(a)1
      III(12844721-12850963)3
    1766911  NM_067260.21  NP_499661.21 


    ENSEMBL Gene Tree for GABRB3 (if available)
    TreeFam Gene Tree for GABRB3 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for GABRB3 gene
    GLRA22  GABRR12  GLRB2  GLRA12  GABRB12  GABRD2  GABRP2  GLRA42  
    GABRB22  GABRQ2  GLRA32  GABRR22  
    18/24 SIMAP similar genes for GABRB3 using alignment to 9 protein entries:     GBRB3_HUMAN (see all proteins) (see all similar genes):
    DKFZp781L0846    GABRB1    GABRB2    GABRQ    GABRP    GABRA3
    GABRA5    GABRA2    GABRR2    GLRA4    GABRA6    GABRD
    GABRR1    GABRG3    GABRR3    GABRE    GLRA2    GLRA3

    GABRB3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/4483 NCBI SNPs in GABRB3 are shown (see all 4483    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 15 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1481395341,2
    Cunknown26971180(+) TGGGTA/G/TTGCTA 2 -- int10--------
    rs716516821,2
    Cother27017906(+) GTTCCC/TGGGAT 4 R G mis12Minor allele frequency- T:0.00CSAM 1356
    rs254091,2
    C,F,Hother27018841(-) TGCTGC/TCCATC 3 P S us2k1 mis1 ese36Minor allele frequency- T:0.01NA NS EA 3326
    rs1897375801,2
    --26788382(+) CCACCC/TTGGCC 4 -- ds50010--------
    rs754911051,2
    F--26788484(+) CTGTGT/CGTCTA 4 -- ds50011Minor allele frequency- C:0.06WA 118
    rs1825242701,2
    --26788526(+) TTTTCA/GTTTTT 4 -- ds50010--------
    rs1452137581,2
    --26788558(+) CTCACA/TTGCAG 4 -- ds50010--------
    rs1871714251,2
    --26788571(+) AACTTC/TGGGCT 4 -- ds50010--------
    rs1917840211,2
    --26788658(+) CACAAC/GATAGC 4 -- ds50010--------
    rs2011140591,2
    --26788671(+) GGAAG-/AAAAAA 4 -- ds50010--------

    HapMap Linkage Disequilibrium report for GABRB3 (26788693 - 27038693 bp, first 250kb of GABRB3)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for GABRB3
         1 CNV: 72207
    Human Gene Mutation Database (HGMD): GABRB3

    SABiosciences Cancer Mutation PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for GABRB3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    GABRB3 for disorders           About GeneDecksing

    OMIM gene information: 137192   
    OMIM disorders: 612269  
    UniProtKB/Swiss-Prot: GBRB3_HUMAN, P28472
  • Note=Defects in GABRB3 are associated with chronic insomnia, a condition of inability to initiate or maintain
  • sleep. This may occur as a primary disorder or in association with another medical or psychiatric condition
  • Defects in GABRB3 are the cause of childhood absence epilepsy type 5 (ECA5) [MIM:612269]. ECA5 is a subtype of
  • idiopathic generalized epilepsy (IGE) characterized by an onset at age 6-7 years, frequent absence seizures (several
    per day) and bilateral, synchronous, symmetric 3-Hz spike waves on EEG. During adolescence, tonic-clonic and myoclonic
    seizures develop. Absence seizures may either remit or persist into adulthood

    20/34 diseases for GABRB3 (see all 34):    About MalaCards
    prader-willi syndrome    angelman syndrome    epilepsy, childhood absence, susceptibility to, 5    post-traumatic stress disorder
    pervasive developmental disorder    childhood absence epilepsy    absence epilepsy    cleft lip/palate
    diaphragmatic eventration    juvenile myoclonic epilepsy    temporal lobe epilepsy    idiopathic generalized epilepsy
    generalized epilepsy    cleft lip    cleft palate    autism spectrum disorder
    orofacial cleft    atypical autism    anorexia nervosa    intellectual disability

    6 diseases from the University of Copenhagen DISEASES database for GABRB3:
    Angelman syndrome     Prader-Willi syndrome     Autistic disorder     Juvenile absence epilepsy
    Childhood disintegrative disease     Diaphragmatic eventration

    10/11 Novoseek disease relationships for GABRB3 gene (see all 11)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    angelman syndrome 92.5 14 10515160 (2), 8389098 (2), 10514831 (1), 8094063 (1) (see all 10)
    prader-willi syndrome 77.8 2 8188218 (1), 1664410 (1)
    childhood absence epilepsy 76.1 4 20308251 (1), 15498372 (1), 18514161 (1), 12194792 (1)
    autistic 65.1 6 17598645 (2), 12491987 (2), 12092907 (1), 11920158 (1)
    rett syndrome 52 1 17339270 (1)
    pervasive developmental disorder 45.1 1 11785506 (1)
    cleft palate 38.3 6 18452349 (3), 8389469 (1)
    epilepsy 35 2 20308251 (1), 10515160 (1)
    chromosomal aberrations 24.9 1 12491987 (1)
    alcoholism 20.1 3 15296817 (2)

    Genetic Association Database (GAD): GABRB3
    Human Genome Epidemiology (HuGE) Navigator: GABRB3 (37 documents)

    Export disorders for GABRB3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for GABRB3 gene, integrated from 9 sources (see all 151):
    (articles sorted by number of sources associating them with GABRB3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Alcohol-related expectancies are associated with the D2 dopamine receptor and GABAA receptor beta3 subunit genes. (PubMed id 15296817)1, 4, 9 Young R.M....Noble E.P. (2004)
    2. The GABAA receptor beta 3 subunit gene: characterization of a human cDNA from chromosome 15q11q13 and mapping to a region of conserved synteny on mouse chromosome 7. (PubMed id 1664410)1, 2, 9 Wagstaff J.... Lalande M. (1991)
    3. Hyperglycosylation and reduced GABA currents of mutated GABRB3 polypeptide in remitting childhood absence epilepsy. (PubMed id 18514161)1, 2, 9 Tanaka M....Delgado-Escueta A.V. (2008)
    4. A strong promoter element is located between alternative exons of a gene encoding the human gamma-aminobutyric acid-type A receptor beta 3 subunit (GABRB3). (PubMed id 8382702)1, 2, 9 Kirkness E.F. and Fraser C.M. (1993)
    5. Localization of the gene encoding the GABAA receptor beta 3 subunit to the Angelman/Prader-Willi region of human chromosome 15. (PubMed id 1714232)1, 2, 9 Wagstaff J.... Lalande M. (1991)
    6. Association between a GABRB3 polymorphism and autism. (PubMed id 11920158)1, 4, 9 Buxbaum J.D....Vitale R. (2002)
    7. ADH1B*1, ADH1C*2, DRD2 (-141C Ins), and 5-HTTLPR are associated with alcoholism in Mexican American men living in Los Angeles. (PubMed id 15318112)1, 4, 9 Konishi T....Wan Y.J. (2004)
    8. Identification of significant association and gene-gene interaction of GABA receptor subunit genes in autism. (PubMed id 16080114)1, 4 Ma D.Q....Pericak-Vance M.A. (2005)
    9. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    10. Polymorphisms of the dopamine D2 receptor, serotonin transporter, and GABA(A) receptor beta(3) subunit genes and alcoholism in Mexican-Americans. (PubMed id 15066703)1, 4 Konishi T....Wan Y.J. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
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    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 2562 HGNC: 4083 AceView: GABRB3 Ensembl:ENSG00000166206 euGenes: HUgn2562
    ECgene: GABRB3 Kegg: 2562 H-InvDB: GABRB3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for GABRB3 Pharmacogenomics, SNPs, Pathways
    Protein Spotlighthttp://web.expasy.org/spotlight/back_issues/sptlt056.shtml

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for GABRB3 gene:
    Search GeneIP for patents involving GABRB3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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