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Aliases & Descriptions for GABRA5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| GABA(A) receptor subunit alpha-5 3 | | gamma-aminobutyric acid (GABA) A receptor, alpha 5 2 | | gamma-aminobutyric acid A receptor, alpha 5 1 |
|
| | Search outside databases for aliases for GABRA5 genePrevious GC identifers: GC15P023334 GC15P020091 GC15P024593 GC15P024722 |
Summaries for GABRA5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for GABRA5: GABA is the major inhibitory neurotransmitter in the mammalian brain where it acts at GABA-A receptors, which are ligand-gated chloride channels. Chloride conductance of these channels can be modulated by agents such as benzodiazepines that bind to the GABA-A receptor. At least 16 distinct subunits of GABA-A receptors have been identified. Transcript variants utilizing three different alternative non-coding first exons have been described. [provided by RefSeq] UniProtKB/Swiss-Prot: GBRA5_HUMAN, P31644Function: GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channelGene Wiki entry for GABRA5 |
Genomic Location for GABRA5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the GABRA5 gene 
Entrez Gene cytogenetic band: 15q11.2-q12 Ensembl cytogenetic band: 15q12 HGNC cytogenetic band: 15q11-q13GABRA5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure GeneLoc location for GC15P024663:
(about GC identifiers)
Start:
|
24,663,151 bp from pter |
End:
|
24,777,095 bp from pter |
Size:
|
113,945 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000015.8 NT_026446.13 NT_078095.2
| Proteins for GABRA5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: GBRA5_HUMAN, P31644 (See
protein sequence)Recommended Name: Gamma-aminobutyric acid receptor subunit alpha-5 precursor Size: 462 amino acids; 52146 Da
Subunit: Generally pentameric. There are five types of GABA(A) receptor chains: alpha, beta, gamma, delta, and rho
Subcellular location: Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein. Cell membrane; Multi-pass membrane protein
Secondary accessions: A8K338 Q14DC2 Q53XL6 Q9NYT3 Q9NYT4 Q9NYT5Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000801.1
ENSEMBL proteins: ENSP00000347557 ENSP00000335592 ENSP00000382953
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for GABRA5: Assays for GABRA5: | Protein
Domains/ Families for GABRA5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P31644
ProtoNet protein and cluster: P31644 4 Blocks protein families: IPB001390 Gamma-aminobutyric-acid A receptor alpha subunit signature IPB005435 Gamma-aminobutyric-acid A receptor alpha 5 subunit signature IPB006028 Gamma-aminobutyric acid A (GABAA) receptor signature IPB006201 Neurotransmitter-gated ion-channel
UniProtKB/Swiss-Prot: GBRA5_HUMAN, P31644Similarity: Belongs to the ligand-gated ionic channel (TC 1.A.9) family | Gene Function for GABRA5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000810
Applied Biosystems Silencer® siRNAs for GABRA5
Sigma-Aldrich siRNA and siRNA Panels for GABRA5  Sigma-Aldrich shRNA for GABRA5  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000810                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000810                                  untagged cDNA clone in CMV expression vector: NM_000810 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000810
UniProtKB/Swiss-Prot: GBRA5_HUMAN, P31644Function: GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channelGenatlas biochemistry entry for GABRA5:gamma-aminobutyric acid (GABA) A receptor,ionotropic,alpha 5,mainly expressed in the brain,with three isoforms,region specific,may be involved in the susceptibility to bipolar affective disorder (? MAFD10),subunit,component of a pentameric receptor mediating inhibitory neurotransmission5 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Gabra5):
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for GABRA5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for GABRA5 (Your Favorite Gene powered by Ingenuity) 
5/22 Interacting proteins for GABRA5 (ENSP000003355923) via UniProtKB, MINT, and/or STRING (see all 22
)About this table
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): About this table
|
Drugs & Compounds for GABRA5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for GABRA5 |
Compounds for GABRA5 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| Muscimol | Potent GABAA agonist | [2763-96-4] | | (+)-Bicuculline | Potent GABAA antagonist | [485-49-4] | | Indiplon | Subtype-selective GABAA receptor positive allosteric modulator | [325715-02-4] | | L-655,708 | Selective for alpha5-containing GABAA receptors | [130477-52-0] | | SR 95531 hydrobromide | Selective, competitive GABAA receptor antagonist | [104104-50-9] | About this table
|
Transcripts for GABRA5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000810
Sigma-Aldrich siRNA and siRNA Panels for GABRA5  Sigma-Aldrich shRNA for GABRA5  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000810 REFSEQ mRNAs for GABRA5 gene: NM_000810.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000810               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000810                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000810                                  untagged cDNA clone in CMV expression vector: NM_000810  Additional cDNA sequence: AK290453.1 AK294303.1 AK303742.1 BC111979.1 BC113422.1 BT009830.1 L08485.1 3 DOTS entries: DT.108991 DT.91659917 DT.121034570 22 AceView cDNA sequences:BM676770 AL119253 F03181 BM719912 AK124673 BU738949 AK126891 AL035783 BI552302 F07441 F06915 F03669 BF966961 F07440 AI807646 L08485 BC011403 BT009830 NM_000810 R35346 R49008 T28792
highest scoring ESTs for GABRA5:L08485 BT009830 AI807646 AL035783 AL119253 BF966961 BI552302 BM676770 BM719912 BU738949 Unigene Cluster for GABRA5: Gamma-aminobutyric acid (GABA) A receptor, alpha 5 Hs.612087 [show with all ESTs]Unigene Representative Sequence: NM_000810
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for GABRA5 (see all 6
)
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | ^ | 7a | · | 7b | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | |
| SP1: | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for GABRA5
3 Ensembl transcripts including schematic representations: ENST00000355395
ENST00000335625
ENST00000400081
|
Expression for GABRA5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| GABRA5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for GABRA5
1 / 2 / 3 7 probe-sets matching GABRA5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.612087
Expression variation in blood from EXPOLDB for GABRA5 |
Orthologs for GABRA5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for GABRA5 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for GABRA5
ENSEMBL Gene Tree for GABRA5 | Paralogs for GABRA5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for GABRA5 gene
- GABRA22 GABRA12
|
SNPs/Variants for GABRA5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for GABRA5 (up to first 250kb)
|
Disorders & Mutations for GABRA5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 137142
5 Novoseek disease relationships for GABRA5 gene
About this table
Genetic Association Database: GABRA5 Human Genome Epidemiology Navigator: GABRA5 (14 documents)
|
Medical News for GABRA5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for GABRA5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/43 PubMed articles for GABRA5 gene (see all 43
):- Cloning and expression of a cDNA encoding the human GABA-A receptor alpha 5 subunit. (PubMed id 1321750)2, 3, 4 Wingrove P....Whiting P. (1992)
- Human gamma-aminobutyric acid-type A receptor alpha5 subunit gene (GABRA5): characterization and structural organization of the 5' flanking region. (PubMed id 9205108)1, 3, 4 Kim Y.... Lalande M. (1997)
- The GABA type A receptor alpha5 subunit gene is associated with bipolar I disorder. (PubMed id 15882799)1, 3, 6 Otani K....Kuroda S. (2005)
- FISH ordering of reference markers and of the gene for the alpha 5 subunit of the gamma-aminobutyric acid receptor (GABRA5) within the Angelman and Prader-Willi syndrome chromosomal regions. (PubMed id 8388764)1, 3, 4 Knoll J.H.... Lalande M. (1993)
- Identification of significant association and gene-gene interaction of GABA receptor subunit genes in autism. (PubMed id 16080114)3, 6 Ma D.Q....Pericak-Vance M.A. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- [Case-control study and transmission/disequilibrium test of childhood absence epilepsy] (PubMed id 12048673)3, 6 Lu J....Wu X. (2002)
- Association between GABA-A receptor alpha 5 subunit gene locus and schizophrenia of a later age of onset. (PubMed id 11287792)3, 6 Papadimitriou G....Stefanis C. (2001)
- GABA-A receptor beta3 and alpha5 subunit gene cluster on chromosome 15q11-q13 and bipolar disorder: a genetic association study. (PubMed id 11378843)3, 6 Papadimitriou G.N....Stefanis C.N. (2001)
- Structure and organization of GABRB3 and GABRA5. (PubMed id 9126483)1, 3 Glatt K....Lalande M. (1997)
|
Search for GABRA5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing GABRA5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing GABRA5
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GABRA5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Protein Spotlight | http://www.expasy.org/spotlight/back_issues/sptlt056.shtml |
|
| | | About This Section
| --
| Services for GABRA5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for GABRA5:

|
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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