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Aliases & Descriptions for GABPA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase , and/or 9 Nature :405,311-319 and CroW21)About This Section
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Aliases E4TF1-60 1 , 2 E4TF1A 1 , 2 , 3 , 5 NFT2 1 , 2 NRF2 1 , 2 NRF2A 1 , 2 OTTHUMP00000096114 2
Descriptions GA binding protein transcription factor, alpha subunit 2 GA binding protein transcription factor, alpha subunit 60kDa 2 GA-binding protein transcription factor, alpha subunit (60kD) 1 GABP subunit alpha 3 Nuclear respiratory factor 2 subunit alpha 3 Transcription factor E4TF1-60 3 human nuclear respiratory factor-2 subunit alpha 2 , 9 nuclear respiratory factor 2 alpha subunit 2
Search outside databases for aliases for GABPA genePrevious GC identifers: GC21P023686 GC21P026023 GC21P026029
Summaries for GABPA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GABPA : This gene encodes one of three GA-binding protein transcription factor subunits which functions asa DNA-binding subunit. Since this subunit shares identity with a subunit encoding the nuclearrespiratory factor 2 gene, it is likely involved in activation of cytochrome oxidase expressionand nuclear control of mitochondrial function. This subunit also shares identity with a subunitconstituting the transcription factor E4TF1, responsible for expression of the adenovirus E4 gene.Because of its chromosomal localization and ability to form heterodimers with other polypeptides,this gene may play a role in the Down Syndrome phenotype. [provided by RefSeq] UniProtKB/Swiss-Prot: GABPA_HUMAN, Q06546 Function : Transcription factor capable of interacting with purine rich repeats (GA repeats).Necessary for the expression of the Adenovirus E4 gene
Gene Wiki entry for GABPA
Genomic Location for GABPA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences , Whole Chromsome Sequence According to
Nature (Cited Here with Permission) :405,311-319 and CroW21)About This Section
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GC21P026028:
GeneLoc
Nature :405,311-319
Start:
26,028,752 bp from pter
12,685,464 bp from centromere
End:
26,066,642 bp from pter
12,719,695 bp from centromere
Size:
37,891 bases
34,232 bases
Orientation:
plus strand
plus strand
RefSeq DNA sequence: NC_000021.7 NT_011512.10 Proteins for GABPA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GABPA_HUMAN, Q06546 (See
protein sequence )Recommended Name: GA-binding protein alpha chain Size : 454 amino acids; 51295 Da
Subunit : Heterotetramer of two alpha and two beta subunits
Subcellular location : Nucleus
Secondary accessions : Q12939
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_002031.2 ENSEMBL proteins: ENSP00000346886 ENSP00000382948 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: GABPA 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for GABPA: Assays for GABPA:
Protein
Domains/ Families for GABPA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q06546 ProtoNet protein and cluster: Q06546
1 Blocks protein family : IPB003118 Sterile alpha motif (SAM)/Pointed domain UniProtKB/Swiss-Prot: GABPA_HUMAN, Q06546 Similarity : Belongs to the ETS familySimilarity : Contains 1 ETS DNA-binding domainSimilarity : Contains 1 PNT (pointed) domain
Gene Function for GABPA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002040 Applied Biosystems Silencer ® siRNAs for GABPA Sigma-Aldrich siRNA for GABPA Sigma-Aldrich shRNA for GABPA Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002040                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002040                                  untagged cDNA clone in CMV expression vector: NM_002040  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002040 UniProtKB/Swiss-Prot: GABPA_HUMAN, Q06546 Function : Transcription factor capable of interacting with purine rich repeats (GA repeats).Necessary for the expression of the Adenovirus E4 gene
Genatlas biochemistry entry for GABPA :GA binding protein,alpha subunit with an ETS related domain,component of the nuclear respiratoryfactor 2,ubiquitously expressed,interacting with the four ankyrin-type repeats to form a highaffinity DNA-binding complex recognizing an important site for herpes simplex virus type Iactivation,putatively involved in the activation of nuclear genes specifying mitochondrialfunction
11 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Gabpa) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for GABPA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for GABPA (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for GABPA 5/11 Interacting proteins for GABPA (ENSP00000346886 3 Q06546 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 11
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0000122 negative regulation of transcription from RNA polymerase II promoter
IEA -- GO:0001701 in utero embryonic development
IEA -- GO:0006350 transcription
IEA --
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Drugs & Compounds for GABPA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for GABPA 5 Novoseek chemical compound relationships for GABPA gene
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Transcripts for GABPA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
Tagged/untagged cDNA clones from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002040 Sigma-Aldrich siRNA for GABPA Sigma-Aldrich shRNA for GABPA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002040
REFSEQ mRNAs for GABPA gene: NM_002040.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002040
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002040                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002040                                  untagged cDNA clone in CMV expression vector: NM_002040  
Additional cDNA sequence: AK223164.1 AK313545.1 BC035031.2 BX647755.1 D13318.1 EU159453.1 U13044.1 X84366.1
10 DOTS entries : DT.99933995 DT.99992826 DT.100727081 DT.453987 DT.121138154 DT.121138106 DT.121137994 DT.121138144 DT.92407558 DT.121079420
24/135 AceView cDNA sequences (see all 135
):AU107258 AW105605 BU188528 AU107257 BI826069 AI624911 BM477941 AI075824 BQ216320 CA392232 BU683067 BM977191 NM_002040 BX647755 AA730256 BQ423139 AA489598 AA935134 AA946680 BQ023312 BM464174 AI684289 T93885 X84366
highest scoring ESTs for GABPA :AI917898 U13044 AA173607 AA377097 AA497016 AA628753 AA704298 AA730256 AA780954 AA897458
Unigene Cluster for GABPA: GA binding protein transcription factor, alpha subunit 60kDa Hs.473470 [show with all ESTs ] Unigene Representative Sequence: BX647755 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000354828
ENST00000400075
Expression for GABPA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GABPA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GABPA 1 / 2 / 3
6 probe-sets matching GABPA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGAAGTTTTTSOURCE GeneReport for Unigene cluster: Hs.473470 Expression variation in blood from EXPOLDB for GABPA
Orthologs for GABPA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GABPA gene from 5/12 species (see all 12
)
About this table Species with no ortholog for GABPA ENSEMBL Gene Tree for GABPA Paralogs for GABPA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GABPA gene ETS2 2 ELK1 2 ETS1 2
SNPs/Variants for GABPA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GABPA (up to first 250kb)
Disorders & Mutations for GABPA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600609 1 Novoseek disease relationship for GABPA gene
About this table Genetic Association Database: GABPA Human Genome Epidemiology Navigator: GABPA (2 documents)
Medical News for GABPA (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GABPA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/104 PubMed articles for GABPA gene (see all 104
): cDNA cloning of transcription factor E4TF1 subunits with Ets and notch motifs. (PubMed id 8441384) 2, 3, 4 Watanabe H.... Handa H. (1993) Identification of polymorphisms in the promoter region of the human NRF2 gene. (PubMed id 15358217) 1, 3, 6 Yamamoto T....Yamamoto M. (2004) Four structurally distinct, non-DNA-binding subunits of human nuclear respiratory factor 2 share a conserved transcriptional activation domain. (PubMed id 7799916) 1, 3, 4 Gugneja S.... Scarpulla R.C. (1995) In vitro methylation of nuclear respiratory factor-2 binding sites suppresses the promoter activity of the human TOMM70 gene. (PubMed id 18852034) 1, 3 Blesa J.R....Hernandez-Yago J. (2008) Mapping of the human transcription factor GABPA (E4TF1-60) gene to chromosome 21. (PubMed id 7590737) 1, 3 Chrast R....Antonarakis S.E. (1995) Human nuclear respiratory factor 2 alpha subunit cDNA: isolation, subcloning, sequencing, and in situ hybridization of transcripts in normal and monocularly deprived macaque visual system. (PubMed id 10660899) 1, 3 Guo A....Wong-Riley M. (2000) Nuclear respiratory factor 2 activates transcription of human mitochondrial translation initiation factor 2 gene. (PubMed id 17161026) 1, 3 Hayashi R....Takeuchi N. (2007) Activation of synoviolin promoter in rheumatoid synovial cells by a novel transcription complex of interleukin enhancer binding factor 3 and GA binding protein alpha. (PubMed id 19116932) 1, 3 Izumi T....Nakajima T. (2009) Assignment of the E4TF1-60 gene to human chromosome 21q21.2-q21.3. (PubMed id 8543189) 1, 3 Goto M....Handa H. (1995) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 3 Barbe L....Andersson-Svahn H. (2008)
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Genome Databases showing GABPA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GABPA
(According to HUGE )
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Specialized Databases showing GABPA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for GABPA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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