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Aliases for GABARAPL1 Gene

Aliases for GABARAPL1 Gene

  • GABA(A) Receptor-Associated Protein Like 1 2 3
  • GEC1 3 4 6
  • GABA(A) Receptor-Associated Protein-Like 1 3 4
  • Glandular Epithelial Cell Protein 1 3 4
  • Early Estrogen-Regulated Protein 3 4
  • GEC-1 3 4
  • Gamma-Aminobutyric Acid Receptor-Associated Protein-Like 1 3
  • GABARAPL1-A 3
  • APG8-LIKE 3
  • APG8L 3
  • ATG8B 3
  • ATG8L 3
  • ATG8 3

External Ids for GABARAPL1 Gene

Previous GeneCards Identifiers for GABARAPL1 Gene

  • GC12P010048
  • GC12P010488
  • GC12P010265
  • GC12P010256
  • GC12P010365
  • GC12P010108

Summaries for GABARAPL1 Gene

GeneCards Summary for GABARAPL1 Gene

GABARAPL1 (GABA(A) Receptor-Associated Protein Like 1) is a Protein Coding gene. Diseases associated with GABARAPL1 include spastic hemiplegia. Among its related pathways are FoxO signaling pathway and Circadian entrainment. GO annotations related to this gene include beta-tubulin binding and GABA receptor binding. An important paralog of this gene is MAP1LC3C.

UniProtKB/Swiss-Prot for GABARAPL1 Gene

  • Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GABARAPL1 Gene

Genomics for GABARAPL1 Gene

Regulatory Elements for GABARAPL1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for GABARAPL1 Gene

Start:
10,212,458 bp from pter
End:
10,223,130 bp from pter
Size:
10,673 bases
Orientation:
Plus strand

Genomic View for GABARAPL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GABARAPL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GABARAPL1 Gene

Proteins for GABARAPL1 Gene

  • Protein details for GABARAPL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0R8-GBRL1_HUMAN
    Recommended name:
    Gamma-aminobutyric acid receptor-associated protein-like 1
    Protein Accession:
    Q9H0R8
    Secondary Accessions:
    • B4E0Y7
    • Q6FIE6

    Protein attributes for GABARAPL1 Gene

    Size:
    117 amino acids
    Molecular mass:
    14044 Da
    Quaternary structure:
    • Interacts with GABRG2 and beta-tubulin (By similarity). Interacts with ATG13, OPRK1, RB1CC1 and ULK1. Interacts with TP53INP1 and TP53INP2. Directly interacts with SQSTM1. Interacts with ATG3, ATG7 and MAP15. Interacts with TECPR2. Interacts with TBC1D5 (PubMed:22354992).

    Three dimensional structures from OCA and Proteopedia for GABARAPL1 Gene

    Alternative splice isoforms for GABARAPL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GABARAPL1 Gene

Proteomics data for GABARAPL1 Gene at MOPED

Post-translational modifications for GABARAPL1 Gene

  • The Legionella effector RavZ is a deconjugating enzyme that produces an ATG8 product that would be resistant to reconjugation by the host machinery due to the cleavage of the reactive C-terminal glycine.
  • The precursor molecule is cleaved by ATG4B to form the cytosolic form, GABARAPL1-I. This is activated by APG7L/ATG7, transferred to ATG3 and conjugated to phospholipid to form the membrane-bound form, GABARAPL1-II (By similarity). ATG4B also mediates the delipidation required for GABARAPL1 recycling when autophagosomes fuse with lysosomes (PubMed:20404487).
  • Ubiquitination at Lys24
  • Modification sites at PhosphoSitePlus

Antibody Products

Protein Products

  • Novus Biologicals proteins for GABARAPL1
  • Cloud-Clone Corp. Proteins for GABARAPL1

No data available for DME Specific Peptides for GABARAPL1 Gene

Domains for GABARAPL1 Gene

Protein Domains for GABARAPL1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9H0R8

UniProtKB/Swiss-Prot:

GBRL1_HUMAN :
  • Q9H0R8
Family:
  • Belongs to the ATG8 family.
genes like me logo Genes that share domains with GABARAPL1: view

No data available for Gene Families for GABARAPL1 Gene

Function for GABARAPL1 Gene

Molecular function for GABARAPL1 Gene

UniProtKB/Swiss-Prot Function: Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation.

Gene Ontology (GO) - Molecular Function for GABARAPL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0008017 microtubule binding IBA --
GO:0030957 Tat protein binding IPI 22354992
GO:0048487 beta-tubulin binding ISS --
GO:0050811 GABA receptor binding ISS --
genes like me logo Genes that share ontologies with GABARAPL1: view

Phenotypes for GABARAPL1 Gene

GenomeRNAi human phenotypes for GABARAPL1:
genes like me logo Genes that share phenotypes with GABARAPL1: view

Animal Model Products

CRISPR Products

miRNA for GABARAPL1 Gene

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GABARAPL1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for GABARAPL1 Gene

Localization for GABARAPL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GABARAPL1 Gene

Cytoplasm, cytoskeleton. Cytoplasmic vesicle membrane; Lipid-anchor. Endoplasmic reticulum. Golgi apparatus. Cytoplasmic vesicle, autophagosome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GABARAPL1 Gene COMPARTMENTS Subcellular localization image for GABARAPL1 gene
Compartment Confidence
cytoskeleton 5
vacuole 5
cytosol 3
endoplasmic reticulum 2
golgi apparatus 2
nucleus 2
plasma membrane 2
extracellular 1

Gene Ontology (GO) - Cellular Components for GABARAPL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000407 pre-autophagosomal structure IBA --
GO:0000421 autophagic vacuole membrane IBA --
GO:0005622 intracellular IDA --
GO:0005737 cytoplasm --
GO:0005739 colocalizes_with mitochondrion IGI 20200478
genes like me logo Genes that share ontologies with GABARAPL1: view

Pathways for GABARAPL1 Gene

genes like me logo Genes that share pathways with GABARAPL1: view

Pathways by source for GABARAPL1 Gene

1 BioSystems pathway for GABARAPL1 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for GABARAPL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000045 autophagic vacuole assembly IBA --
GO:0000422 mitochondrion degradation IBA --
GO:0006914 autophagy --
GO:0044804 nucleophagy IBA --
GO:0061025 membrane fusion IBA --
genes like me logo Genes that share ontologies with GABARAPL1: view

Compounds for GABARAPL1 Gene

(1) HMDB Compounds for GABARAPL1 Gene

Compound Synonyms Cas Number PubMed IDs
Gamma-Aminobutyric acid
  • 3-Carboxypropylamine
56-12-2
genes like me logo Genes that share compounds with GABARAPL1: view

Transcripts for GABARAPL1 Gene

Unigene Clusters for GABARAPL1 Gene

GABA(A) receptor-associated protein like 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GABARAPL1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GABARAPL1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c · 9d ^ 10a · 10b · 10c · 10d
SP1: - - - - - - - - -
SP2: - -
SP3: - - - - - - - - -
SP4: - - - - - - -
SP5: - - - - - - - -
SP6: - - - -
SP7: - - -
SP8: -
SP9: - - - - - - - -
SP10: - - -
SP11: - - - - - - - - - -
SP12: - - - -

Relevant External Links for GABARAPL1 Gene

GeneLoc Exon Structure for
GABARAPL1
ECgene alternative splicing isoforms for
GABARAPL1

Expression for GABARAPL1 Gene

mRNA expression in normal human tissues for GABARAPL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for GABARAPL1 Gene

SOURCE GeneReport for Unigene cluster for GABARAPL1 Gene Hs.524250

mRNA Expression by UniProt/SwissProt for GABARAPL1 Gene

Q9H0R8-GBRL1_HUMAN
Tissue specificity: Ubiquitous. Expressed at very high levels in the brain, heart, peripheral blood leukocytes, liver, kidney, placenta and skeletal muscle. Expressed at very low levels in thymus and small intestine. In the brain, expression is particularly intense in motoneurons in the embryo and in neurons involved in somatomotor and neuroendocrine functions in the adult, particularly in the substantia nigra pars compacta.
genes like me logo Genes that share expressions with GABARAPL1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for GABARAPL1 Gene

Orthologs for GABARAPL1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for GABARAPL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GABARAPL1 35
  • 99.72 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia GABARAPL1 35
  • 94.3 (n)
  • 100 (a)
dog
(Canis familiaris)
Mammalia GABARAPL1 35
  • 95.16 (n)
  • 100 (a)
mouse
(Mus musculus)
Mammalia Gabarapl1 35
  • 92.88 (n)
  • 100 (a)
Gabarapl1 16
oppossum
(Monodelphis domestica)
Mammalia GABARAPL1 36
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 99 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Gabarapl1 35
  • 91.74 (n)
  • 100 (a)
chicken
(Gallus gallus)
Aves GABARAPL1 35
  • 86.32 (n)
  • 100 (a)
lizard
(Anolis carolinensis)
Reptilia GABARAPL1 36
  • 95 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gabarapl1 35
  • 81.2 (n)
  • 100 (a)
zebrafish
(Danio rerio)
Actinopterygii CR847510.1 36
  • 34 (a)
ManyToMany
LOC793200 35
  • 76.07 (n)
  • 87.18 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002685 35
  • 71.84 (n)
  • 87.07 (a)
fruit fly
(Drosophila melanogaster)
Insecta Atg8a 35
  • 74.71 (n)
  • 85.34 (a)
CG12334 37
  • 73 (a)
worm
(Caenorhabditis elegans)
Secernentea lgg-1 35
  • 71.84 (n)
  • 78.45 (a)
lgg-1 37
  • 78 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER396W 35
  • 53.39 (n)
  • 52.21 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ATG8 35
  • 56.13 (n)
  • 54.7 (a)
ATG8 36
  • 55 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E20593g 35
  • 53.45 (n)
  • 54.31 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons ATG8D 35
  • 61.36 (n)
  • 56.64 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.28658 35
bread mold
(Neurospora crassa)
Ascomycetes NCU01545 35
  • 59.2 (n)
  • 55.17 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes atg8 35
  • 56.61 (n)
  • 55.17 (a)
Species with no ortholog for GABARAPL1:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for GABARAPL1 Gene

ENSEMBL:
Gene Tree for GABARAPL1 (if available)
TreeFam:
Gene Tree for GABARAPL1 (if available)

Paralogs for GABARAPL1 Gene

Paralogs for GABARAPL1 Gene

genes like me logo Genes that share paralogs with GABARAPL1: view

Variants for GABARAPL1 Gene

Sequence variations from dbSNP and Humsavar for GABARAPL1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs7248 -- 10,222,703(+) CAGGA(A/C)AGAGG utr-variant-3-prime
rs11539 -- 10,222,120(+) TACAG(C/T)ATTCC utr-variant-3-prime, downstream-variant-500B
rs2900384 -- 10,221,282(-) TGACA(C/T)TTCCA intron-variant, utr-variant-3-prime
rs4326886 -- 10,215,287(+) TTAGC(C/T)CCACC intron-variant
rs4326887 -- 10,223,289(+) AGGAG(G/T)TGCTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for GABARAPL1 Gene

Variant ID Type Subtype PubMed ID
nsv898757 CNV Gain 21882294

Relevant External Links for GABARAPL1 Gene

HapMap Linkage Disequilibrium report
GABARAPL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GABARAPL1 Gene

Disorders for GABARAPL1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for GABARAPL1 Gene including...

Search for GABARAPL1 Gene in MalaCards »

(1) University of Copenhagen DISEASES for GABARAPL1 Gene

Relevant External Links for GABARAPL1

Genetic Association Database (GAD)
GABARAPL1
Human Genome Epidemiology (HuGE) Navigator
GABARAPL1
genes like me logo Genes that share disorders with GABARAPL1: view

No data available for UniProtKB/Swiss-Prot for GABARAPL1 Gene

Publications for GABARAPL1 Gene

  1. A novel early estrogen-regulated gene gec1 encodes a protein related to GABARAP. (PMID: 11374880) Vernier-Magnin S. … Fraichard A. (Biochem. Biophys. Res. Commun. 2001) 2 3 4 23
  2. Cloning, expression patterns, and chromosome localization of three human and two mouse homologues of GABA(A) receptor-associated protein. (PMID: 11414770) Xin Y. … Zhao S. (Genomics 2001) 2 3 4 23
  3. Caspase cleavage of Atg4D stimulates GABARAP-L1 processing and triggers mitochondrial targeting and apoptosis. (PMID: 19549685) Betin V.M. … Lane J.D. (J. Cell. Sci. 2009) 3 23
  4. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  5. Atg8L/Apg8L is the fourth mammalian modifier of mammalian Atg8 conjugation mediated by human Atg4B, Atg7 and Atg3. (PMID: 16704426) Tanida I. … Kominami E. (FEBS J. 2006) 3 23

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