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Aliases & Descriptions for G6PD
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 1.1.1.49 3 G6PD1 1 , 2 , 5 OTTHUMP00000026034 2
Descriptions glucose-6-phosphate 1-dehydrogenase 2 glucose-6-phosphate dehydrogenase 2 glucose-6-phosphate dehydrogenase, G6PD 2
Search outside databases for aliases for G6PD genePrevious GC identifers: GC0XM147822 GC0XM150140 GC0XM151344 GC0XM152227 GC0XM153323
Summaries for G6PD (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for G6PD : This gene encodes glucose-6-phosphate dehydrogenase. This protein is a cytosolic enzyme encoded bya housekeeping X-linked gene whose main function is to produce NADPH, a key electron donor in thedefense against oxidizing agents and in reductive biosynthetic reactions. G6PD is remarkable forits genetic diversity. Many variants of G6PD, mostly produced from missense mutations, have beendescribed with wide ranging levels of enzyme activity and associated clinical symptoms. G6PDdeficiency may cause neonatal jaundice, acute hemolysis, or severe chronic non-spherocytichemolytic anemia. Two transcript variants encoding different isoforms have been found for thisgene. [provided by RefSeq] UniProtKB/Swiss-Prot: G6PD_HUMAN, P11413 Function : Produces pentose sugars for nucleic acid synthesis and main producer of NADPH reducingpower
Gene Wiki entry for G6PD (Glucose-6-phosphate_dehydrogenase)
Genomic Location for G6PD
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the G6PD gene Entrez Gene cytogenetic band: Xq28 Ensembl cytogenetic band: Xq28 HGNC cytogenetic band: Xq28 G6PD Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XM153412:
(about GC identifiers )
Start:
153,412,800 bp from pter
End:
153,428,981 bp from pter
Size:
16,182 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000023.9 NT_011726.13 Proteins for G6PD
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: G6PD_HUMAN, P11413 (See
protein sequence )Recommended Name: Glucose-6-phosphate 1-dehydrogenase Size : 515 amino acids; 59257 Da
Subunit : Homodimer or homotetramer
Miscellaneous : Has NADP both as cofactor (bound to the N-terminal domain) and as structural elementbound to the C-terminal domain
PDB structures from and Proteopedia : 1QKI (3D)
 2BH9 (3D)
 2BHL (3D)
 
Secondary accessions : Q16000 Q16765 Q8IU70 Q8IU88 Q8IUA6 Q96PQ2Alternative splicing : 2 isoforms : P11413-1 P11413-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000393.4 NP_001035810.1 ENSEMBL proteins: ENSP00000377192 ENSP00000291567 ENSP00000377194 ENSP00000358633 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: G6PD 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for G6PD: Assays for G6PD:
Protein
Domains/ Families for G6PD(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P11413 ProtoNet protein and cluster: P11413
1 Blocks protein family : IPB001282 Glucose-6-phosphate dehydrogenase UniProtKB/Swiss-Prot: G6PD_HUMAN, P11413 Similarity : Belongs to the glucose-6-phosphate dehydrogenase family
Gene Function for G6PD
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000402 Applied Biosystems Silencer ® siRNAs for G6PD Sigma-Aldrich siRNA and siRNA Panels for G6PD Sigma-Aldrich shRNA for G6PD Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000402                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000402                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000402  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000402 UniProtKB/Swiss-Prot: G6PD_HUMAN, P11413 Function : Produces pentose sugars for nucleic acid synthesis and main producer of NADPH reducingpower Catalytic activity : D-glucose 6-phosphate + NADP(+) = D-glucono-1,5-lactone 6-phosphate + NADPHEnzyme Number (IUBMB): EC 1.1.1.49
Genatlas biochemistry entry for G6PD :glucose-6-phosphate dehydrogenase,dimer,or tetramer of a 59.3kDa subunit,cytosolic,ubiquitouslyexpressed,first step of pentose phosphate,pathway mainly involved in the defense against oxidizingagents through NADPH production,pentose phosphate pathway
9 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for G6pdx) :5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for G6PD
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for G6PD (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: G6PD_HUMAN, P11413 Pathway : Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose6-phosphate (oxidative stage): step 1/3
Gene Network CentralTM Interacting Genes and Proteins Network for G6PD 5/77 Interacting proteins for G6PD (ENSP00000291567 3 ) via UniProtKB, MINT, and/or STRING (see all 77
)About this table 5/14 Gene Ontology (GO) biological process terms (links to tree view) (see all 14
):
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Drugs & Compounds for G6PD (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for G6PD 10/49 Novoseek chemical compound relationships for G6PD gene (see all 49
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
glucose 6-phosphate
99.05
3446
8790979 (6), 12902098 (6), 12438773 (6), 12476860 (6) (see all 99 )
6-phosphogluconate
85.94
86
8790979 (4), 8955144 (2), 1637668 (2), 7875715 (2) (see all 54 )
nadph
77.88
199
14614139 (4), 17675065 (4), 2297768 (3), 2269430 (3) (see all 99 )
nadp+
74.47
53
16934959 (3), 15858258 (3), 14980702 (2), 2403336 (2) (see all 31 )
neotetrazolium
67.35
4
7930518 (1), 10582692 (1), 9306960 (1)
2',5'-adp
65.12
4
15003259 (1), 12696635 (1), 11237690 (1), 14704475 (1)
o-ethylhydroxylamine
62.99
1
10087986 (1)
superoxide
62.30
125
17675065 (4), 8899868 (3), 14973180 (2), 10395749 (2) (see all 96 )
epiandrosterone
62.05
5
9523930 (2), 8251763 (1), 12475725 (1)
pyruvate
61.45
74
1434530 (4), 2168088 (2), 2049468 (2), 8869370 (2) (see all 53 )
About this table 4 PharmGKB drug compound relationships for G6PD gene About this table
Transcripts for G6PD(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000402 Sigma-Aldrich siRNA and siRNA Panels for G6PD Sigma-Aldrich shRNA for G6PD Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000402 NM_001042351
REFSEQ mRNAs for G6PD gene (2 alternative transcripts): NM_000402.3 NM_001042351.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000402 NM_001042351
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000402                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000402                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000402  
Additional cDNA sequence: M19866.1
22 DOTS entries : DT.217832 DT.121293712 DT.100886708 DT.100886711 DT.97760191 DT.95181123 DT.91651365 DT.95181033 DT.99948311 DT.100886676 DT.100886712 DT.121294781 DT.92459873 DT.100886703 DT.121293725 DT.95181124 DT.100886697 DT.121293821 DT.121294265 DT.80100454 DT.95181111 DT.95181122
24/494 AceView cDNA sequences (see all 494
):BQ934527 BQ955025 BI333724 BM153536 BG740654 CN483145 BM823725 AL043503 CR606589 AL527352 BU557997 BE264631 BQ954497 CF272496 BU543660 BQ052923 BM916963 CA429090 CA487496 BP356172 BQ889036 BQ935766 F07572 BE464610
highest scoring ESTs for G6PD :AL043502 AL539344 AL551425 AW247067 BC000337 BE409866 BE890533 BF027344 BG252525 BG287979
Unigene Clusters for G6PD: Glucose-6-phosphate dehydrogenase Hs.461047 [show with all ESTs ] , Hs.684904 Unigene Representative Sequences: X03674 , M19866 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for G6PD (see all 8
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14a · 14b SP1 :                                             SP2 :     -                                         SP3 :     -                                         SP4 :                                             SP5 :                                            
About this scheme ECgene alternative splicing isoforms for G6PD 4 Ensembl transcripts including schematic representations : ENST00000393562
ENST00000291567
ENST00000393564
ENST00000369620
Expression for G6PD
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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G6PD expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for G6PD 1 / 2 / 3
2 probe-sets matching G6PD gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCCTTGAACCSOURCE GeneReport for Unigene clusters: Hs.461047 Hs.684904 Expression variation in blood from EXPOLDB for G6PD
UniProtKB/Swiss-Prot: G6PD_HUMAN, P11413 Tissue specificity : The long isoform is found in lymphoblasts, granulocytes and sperm
Orthologs for G6PD
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for G6PD gene from 5/23 species (see all 23
)
About this table Species with no ortholog for G6PD ENSEMBL Gene Tree for G6PD Paralogs for G6PD (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for G6PD gene H6PD 2 PGLS 2
SNPs/Variants for G6PD (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: G6PD_HUMAN, P11413 Polymorphism : The sequence shown is that of variant B, the most common variant
HapMap Linkage Disequilibrium images for G6PD (up to first 250kb)
Disorders & Mutations for G6PD
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 305900 UniProtKB/Swiss-Prot: G6PD_HUMAN, P11413
Defects in G6PD are the cause of chronic non-spherocytic hemolytic anemia (CNSHA)[MIM:305900]. Deficiency of G6PD is associated with hemolytic anemia in two different situations.First, in areas in which malaria has been endemic, G6PD-deficiency alleles have reached highfrequencies (1% to 50%) and deficient individuals, though essentially asymptomatic in the steadystate, have a high risk of acute hemolytic attacks. Secondly, sporadic cases of G6PD deficiencyoccur at a very low frequencies, and they usually present a more severe phenotype. Several typesof CNSHA are recognized. Class-I variants are associated with severe NSHA; class-II have anactivity <10% of normal; class-III have an activity of 10% to 60% of normal; class-IV have nearnormal activity
10/98 Novoseek disease relationships for G6PD gene (see all 98
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
g6pd deficiency
99.30
2502
12971572 (11), 11903742 (10), 18385045 (9), 18582416 (9) (see all 99 )
favism
94.10
56
8991858 (3), 15957246 (2), 16513531 (2), 10571945 (2) (see all 28 )
enzymopathy
92.23
73
8813716 (2), 2386513 (1), 2393028 (1), 8235390 (1) (see all 42 )
jaundice neonatal
90.08
129
11317924 (6), 1468858 (5), 16255851 (4), 11529386 (3) (see all 63 )
kernicterus
88.03
66
12729287 (4), 17483701 (3), 12208096 (2), 18460213 (2) (see all 35 )
anemia hemolytic
87.45
173
15645702 (3), 9332310 (3), 18677765 (3), 9674740 (2) (see all 99 )
hemolysis
86.78
276
11783956 (4), 8703811 (3), 16603783 (3), 15910447 (3) (see all 99 )
enzyme deficiency
83.84
55
8579339 (1), 8639919 (1), 12737943 (1), 2386511 (1) (see all 38 )
hyperbilirubinemia
81.11
103
10091404 (3), 10390262 (3), 12368976 (3), 17483701 (3) (see all 51 )
methemoglobinemia
75.03
28
17992408 (3), 16204390 (2), 11824767 (2), 18561168 (1) (see all 20 )
About this table 2 PharmGKB disease relationships for G6PD gene About this table Genatlas disease: G6PD anemia,non spherocytic,congenital,hemolytic anemia,favism Human Gene Mutation Database : G6PD Genetic Association Database: G6PD Human Genome Epidemiology Navigator: G6PD (66 documents)
Medical News for G6PD (Possibly Related Articles in
Doctor's Guide )
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Publications for G6PD (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/1388 PubMed articles for G6PD gene (see all 1388
): A novel single-base mutation in the glucose 6-phosphate dehydrogenase gene is associated with chronic non-spherocytic haemolytic anaemia. (PubMed id 7959695) 1, 3, 4, 6 Filosa S....Martini G. (1994) Human glucose-6-phosphate dehydrogenase: primary structure and cDNA cloning. (PubMed id 3012556) 2, 3, 4 Takizawa T.... Yoshida A. (1986) Structural analysis of the X-linked gene encoding human glucose 6-phosphate dehydrogenase. (PubMed id 2428611) 2, 3, 4 Martini G....Persico M.G. (1986) Glucose-6-phosphate dehydrogenase (G6PD) mutations in Thailand: G6PD Viangchan (871G>A) is the most common deficiency variant in the Thai population. (PubMed id 11793482) 1, 3, 6 Nuchprayoon I....Nuchprayoon S. (2002) Glucose-6-phosphate dehydrogenase (G6PD) variants in Malaysian Malays. (PubMed id 12497642) 1, 3, 6 Ainoon O....Hamidah N.H. (2003) Molecular study of eight Japanese cases of glucose-6-phosphate dehydrogenase deficiency by nonradioisotopic single-strand conformation polymorphism analysis. (PubMed id 8193373) 1, 3, 4 Hirono A.... Kubota K. (1994) A new glucose-6-phosphate dehydrogenase variant, G6PD Orissa (44 Ala-->Gly), is the major polymorphic variant in tribal populations in India. (PubMed id 8533762) 1, 3, 4 Kaeda J.S....Mason P.J. (1995) Glucose-6-phosphate dehydrogenase (G6PD) mutations in Cambodia: G6PD Viangchan (871G>A) is the most common variant in the Cambodian population. (PubMed id 16136268) 1, 3, 6 Matsuoka H....Kawamoto F. (2005) Glucose-6-phosphate dehydrogenase mutations and haplotypes in Mexican Mestizos. (PubMed id 11042039) 1, 3, 6 Arambula E....Vaca G. (2000) Glucose-6-phosphate dehydrogenase deficiency does not result from mutations in the promoter region of the G6PD gene. (PubMed id 12696079) 1, 3, 6 Menounos P.G....Patrinos G.P. (2003)
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Genome Databases showing G6PD
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing G6PD
(According to HUGE )
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Specialized Databases showing G6PD (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for G6PD Genetics and Cytogenetics in Oncology and Haematology G6PD http://rialto.com/g6pd/ G6PDdb http://www.rubic.rdg.ac.uk/g6pd/ GeneReviews http://www.genetests.org/query?gene=G6PD SHMPD http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=G6PD
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-- Services for G6PD (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for G6PD:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009