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Aliases & Descriptions for G3BP1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.6.1.- 3 G3BP 1 , 2 , 3 G3BP-1 3 HDH-VIII 1 , 2 , 3 MGC111040 2 OTTHUMP00000160618 2
Descriptions ATP-dependent DNA helicase VIII 3 GAP SH3 domain-binding protein 1 3 GAP binding protein 2 GTPase activating protein (SH3 domain) binding protein 1 2 Ras-GTPase-activating protein SH3-domain-binding protein 2 RasGAP-associated endoribonuclease G3BP 2
Search outside databases for aliases for G3BP1 gene
Summaries for G3BP1 (According to Entrez Gene ,
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EntrezGene summary for G3BP1 : This gene encodes one of the DNA-unwinding enzymes which prefers partially unwound 3'-tailedsubstrates and can also unwind partial RNA/DNA and RNA/RNA duplexes in an ATP-dependent fashion.This enzyme is a member of the heterogeneous nuclear RNA-binding proteins and is also an elementof the Ras signal transduction pathway. It binds specifically to the Ras-GTPase-activating proteinby associating with its SH3 domain. Several alternatively spliced transcript variants of this genehave been described, but the full-length nature of some of these variants has not been determined.[provided by RefSeq] UniProtKB/Swiss-Prot: G3BP1_HUMAN, Q13283 Function : May be a regulated effector of stress granule assembly. Phosphorylation-dependentsequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine andcleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwindspreferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrateswith comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along thebound single-stranded DNA
Gene Wiki entry for G3BP1
Genomic Location for G3BP1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q33.1 Ensembl cytogenetic band: 5q33.1 HGNC cytogenetic band: 5q33.1 G3BP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P151132:
(about GC identifiers )
Start:
151,131,664 bp from pter
End:
151,172,539 bp from pter
Size:
40,876 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000005.8 NT_029289.10 Proteins for G3BP1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
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Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
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Cell Signaling Technology ,
Abcam ,
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Novus Biologicals )
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UniProtKB/Swiss-Prot: G3BP1_HUMAN, Q13283 (See
protein sequence )Recommended Name: Ras GTPase-activating protein-binding protein 1 Size : 466 amino acids; 52164 Da
Cofactor : Magnesium. Required for helicase activity
Subunit : Binds to the SH3 domain of Ras GTPase-activating protein (RASA1) in proliferating cells.No interaction in quiescent cells Component of a TAU mRNP complex, at least composed of IGF2BP1,ELAVL4 and G3BP (By similarity). Interacts with USP10, and may regulate it. Forms homodimers andoligomers
Subcellular location : Cytoplasm. Cytoplasm, cytosol. Cell membrane. Nucleus. Note=Cytoplasmic inproliferating cells, can be recruited to the plasma membrane in exponentially growing cells (Bysimilarity). Cytosolic and partially nuclear in resting cells. Recruited to stress granules (SGs)upon either arsenite or high temperature treatment. Recruitment to SGs is influenced by HRAS
Post-translational modifications:
Phosphorylated exclusively on serine residues. Hyperphosphorylated in quiescent fibroblasts.Hypophosphorylation leads to a decrease in endoribonuclease activity (By similarity).RASA1-dependent phosphorylation of Ser-149 induces a conformational change that preventsself-association. Dephosphorylation after HRAS activation is required for stress granule assembly.Ser-149 phosphorylation induces partial nuclear localization1
Arg-435 is dimethylated, probably to asymmetric dimethylarginine1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_005745.1 NP_938405.1 ENSEMBL proteins: ENSP00000274596 ENSP00000377681 ENSP00000348578 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for G3BP1: Assays for G3BP1:
Protein
Domains/ Families for G3BP1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13283 ProtoNet protein and cluster: Q13283
2 Blocks protein families : IPB000504 RNA-binding region RNP-1 (RNA recognition motif) IPB002075 Nuclear transport factor 2 (NTF2) UniProtKB/Swiss-Prot: G3BP1_HUMAN, Q13283 Domain : The NTF2 domain mediates multimerizationSimilarity : Contains 1 NTF2 domainSimilarity : Contains 1 RRM (RNA recognition motif) domain
Gene Function for G3BP1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
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Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_005754 Applied Biosystems Silencer ® siRNAs for G3BP1 Sigma-Aldrich siRNA for G3BP1 Sigma-Aldrich shRNA Panels and shRNA for G3BP1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_005754                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_005754                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_005754  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_198395 UniProtKB/Swiss-Prot: G3BP1_HUMAN, Q13283 Function : May be a regulated effector of stress granule assembly. Phosphorylation-dependentsequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine andcleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwindspreferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrateswith comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along thebound single-stranded DNA Enzyme Number (IUBMB): EC 3.6.1.-
10 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for G3bp1) :5/10 Gene Ontology (GO) molecular function terms (links to tree view) (see all 10
):
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Pathways & Interactions for G3BP1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for G3BP1 5/20 Interacting proteins for G3BP1 (Q13283 1 , 2 ENSP00000348578 3 ) via UniProtKB, MINT, and/or STRING (see all 20
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for G3BP1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for G3BP1 1 Novoseek chemical compound relationship for G3BP1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
0.78
2
15743820 (1), 9575347 (1)
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Transcripts for G3BP1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_005754 Sigma-Aldrich siRNA for G3BP1 Sigma-Aldrich shRNA Panels and shRNA for G3BP1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005754 NM_198395
REFSEQ mRNAs for G3BP1 gene (2 alternative transcripts): NM_005754.2 NM_198395.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005754 NM_198395
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_005754                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_005754                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_005754  
Additional cDNA sequence: AK130003.1 AK222606.1 AK300098.1 AK303580.1 AK309172.1 AK311635.1 AK312572.1 BC006997.1 BC108278.1 BT019384.1 BX647869.1 BX648012.1 CR536535.1 CR601908.1 CR614415.1 CR625819.1 U32519.1
24/29 DOTS entries (see all 29
): DT.417505 DT.215685 DT.92410058 DT.92452506 DT.97860154 DT.99927264 DT.100037754 DT.100645520 DT.100706249 DT.215684 DT.120868951 DT.120868984 DT.120869069 DT.92452517 DT.95230237 DT.100059279 DT.100653969 DT.120869009 DT.120869041 DT.120869070 DT.40113075 DT.75186461 DT.92452516 DT.95230232
24/462 AceView cDNA sequences (see all 462
):BM997120 NM_198395 BU192715 AW675016 AI805614 BE301413 BQ215164 AA425230 BF196887 BM797359 BE326309 AI679147 AW516391 AU103593 AU103595 BU620479 BX405314 AA136500 Z39647 CA944886 AI358600 CB143400 Z42330 AA345946
highest scoring ESTs for G3BP1 :AI394318 U32519 AA129537 AA136500 AA256363 AA357385 AA360761 AA360892 AA425151 AA425230
Unigene Cluster for G3BP1: GTPase activating protein (SH3 domain) binding protein 1 Hs.587054 [show with all ESTs ] Unigene Representative Sequence: NM_005754 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for G3BP1 (see all 8
) ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c · 3d ^ 4a · 4b ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b SP1 :       -         -           -                             SP2 :       -   -       -           -                             SP3 :       -       -   -   -         -                             SP4 :       -   -       -         -   -   -   -   -   -   -   -   -   -   -   -   -       SP5 :                                           -   -   -      
About this scheme ECgene alternative splicing isoforms for G3BP1 3 Ensembl transcripts including schematic representations : ENST00000274596
ENST00000394123
ENST00000356245
Expression for G3BP1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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G3BP1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for G3BP1 1 / 2 / 3
17 probe-sets matching G3BP1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.587054 UniProtKB/Swiss-Prot: G3BP1_HUMAN, Q13283 Tissue specificity : Ubiquitous
Orthologs for G3BP1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for G3BP1 gene from 5/13 species (see all 13
)
About this table Species with no ortholog for G3BP1 ENSEMBL Gene Tree for G3BP1 Paralogs for G3BP1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for G3BP1 gene G3BP2 2 Pseudogenes 1 related pseudogene
SNPs/Variants for G3BP1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for G3BP1 (up to first 250kb)
Disorders & Mutations for G3BP1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 608431 5 Novoseek disease relationships for G3BP1 gene
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Medical News for G3BP1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for G3BP1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/65 PubMed articles for G3BP1 gene (see all 65
): A Ras-GTPase-activating protein SH3-domain-binding protein. (PubMed id 8649363) 1, 2, 3, 4 Parker F.... Tocque B. (1996) Human DNA helicase VIII: a DNA and RNA helicase corresponding to the G3BP protein, an element of the ras transduction pathway. (PubMed id 9889278) 1, 2, 3, 4 Costa M....Falaschi A. (1999) The RasGAP-associated endoribonuclease G3BP assembles stress granules. (PubMed id 12642610) 1, 3, 4 Tourriere H.... Tazi J. (2003) Ras-GAP SH3 domain binding protein (G3BP) is a modulator of USP10, a novel human ubiquitin specific protease. (PubMed id 11439350) 1, 3, 4 Soncini C.... Draetta G. (2001) Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220) 3, 4 Nousiainen M.... Koerner R. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry. (PubMed id 16094384) 3, 4 Tao W.A.... Aebersold R. (2005) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 3, 4 Beausoleil S.A....Gygi S.P. (2004) Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. (PubMed id 15782174) 3, 4 Ong S.E.... Mann M. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004)
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Genome Databases showing G3BP1
(According to
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing G3BP1
(According to HUGE )
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--
Specialized Databases showing G3BP1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for G3BP1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009