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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FYTTD1 Gene

protein-coding   GIFtS: 47
GCID: GC03P197464

forty-two-three domain containing 1

 Explore 1 disease affiliated with
FYTTD1 via our new
 Human Malady Compendium 
Biological research products
for FYTTD1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Forty-Two-Three Domain Containing 11 2
UIF1 2 3
Forty-Two-Three Domain-Containing Protein 12 3
Protein 40-2-32 3
DKFZp761B15141
UAP56-Interacting Factor2

External Ids:    HGNC: 254071   Entrez Gene: 842482   Ensembl: ENSG000001220687   UniProtKB: Q96QD93   
ORGUL members:         
NONCODE:n408048    

Export aliases for FYTTD1 gene to outside databases

Previous GC identifers: GC03P198965 GC03P194779


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: UIF_HUMAN, Q96QD9
Function: Required for mRNA export from the nucleus to the cytoplasm. Acts as an adapter that uses the
DDX39B/UAP56-NFX1 pathway to ensure efficient mRNA export and delivering to the nuclear pore. Associates with spliced
and unspliced mRNAs simultaneously with ALYREF/THOC4




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_029928.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FYTTD1 gene promoter:
         c-Fos   RP58   AP-1   POU3F2 (N-Oct-5a)   POU3F2 (N-Oct-5b)   POU3F2   CREB   MZF-1   c-Jun   Ik-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidFYTTD1 promoter sequence
   Search SABiosciences Chromatin IP Primers for FYTTD1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FYTTD1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q29   Ensembl cytogenetic band:  3q29   HGNC cytogenetic band: 3q29

FYTTD1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FYTTD1 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P197464:  view genomic region     (about GC identifiers)

Start:
197,464,050 bp from pter      End:
197,511,317 bp from pter
Size:
47,268 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: UIF_HUMAN, Q96QD9 (See protein sequence)
Recommended Name: UAP56-interacting factor  
Size: 318 amino acids; 35818 Da
Subunit: Interacts with CHTOP (By similarity). Interacts with DDX39B/UAP56 and NXF1; interaction with DDX39B/UAP56 and
NXF1 are mutually exclusive. Interacts with SSRP1; required for its recruitment to mRNAs
Subcellular location: Nucleus, nucleoplasm. Nucleus speckle
Secondary accessions: A8MY74 B2RCB2 B7Z3R4 B7Z7V1 B7Z8I0 B7ZAJ3 C9J7P6 C9JNG6 C9JTH3 C9JY50 Q96SL9
Q9BQI8
Alternative splicing: 4 isoforms:  Q96QD9-1   Q96QD9-2   Q96QD9-3   Q96QD9-4   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for FYTTD1: NX_Q96QD9

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96QD9

  • FYTTD1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001011537.2  NP_115664.2  

    ENSEMBL proteins: 
     ENSP00000399896   ENSP00000417742   ENSP00000393746   ENSP00000241502   ENSP00000409257  
     ENSP00000400191   ENSP00000389557   ENSP00000394631   ENSP00000391157  

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    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for FYTTD1

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005654nucleoplasm IDA19836239
    GO:0016607nuclear speck IDA19836239


    FYTTD1 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for FYTTD1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    FYTTD1 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR009782 DUF1346

    Graphical View of Domain Structure for InterPro Entry Q96QD9

    ProtoNet protein and cluster: Q96QD9

    UniProtKB/Swiss-Prot: UIF_HUMAN, Q96QD9
    Similarity: Belongs to the UIF family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: UIF_HUMAN, Q96QD9
    Function: Required for mRNA export from the nucleus to the cytoplasm. Acts as an adapter that uses the
    DDX39B/UAP56-NFX1 pathway to ensure efficient mRNA export and delivering to the nuclear pore. Associates with spliced
    and unspliced mRNAs simultaneously with ALYREF/THOC4

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    hsa-miR-411* hsa-miR-21* hsa-miR-2052 hsa-miR-4307 hsa-miR-19b-2* hsa-miR-379* hsa-miR-300 hsa-miR-548k
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003729mRNA binding IDA19836239
    GO:0005515protein binding IPI19836239


    FYTTD1 for ontologies           About GeneDecksing


    3 GenomeRNAi human phenotypes for FYTTD1:
     G0/1 arrest  Increased G1 DNA content  Increased HPV18 LCR reporter a 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FYTTD1

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5/561 Interacting proteins for FYTTD1 (Q96QD92, 3 ENSP000002415024) via UniProtKB, MINT, STRING, and/or I2D (see all 561)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TSPAN7P417322, 3, ENSP000003677434MINT-65312 I2D: score=3 STRING: ENSP00000367743
    SHBGP042783, ENSP000003698164I2D: score=2 STRING: ENSP00000369816
    SNW1Q135732, ENSP000002615314MINT-7945693 STRING: ENSP00000261531
    E2F4Q162543I2D: score=1 
    ABCF1Q8NE712MINT-7945693
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006406mRNA export from nucleus IMP19836239


    FYTTD1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FYTTD1
    Search CenterWatch for drugs/clinical trials and news about FYTTD1 / UIF 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for FYTTD1 gene (2 alternative transcripts): 
    NM_001011537.2  NM_032288.6  

    Unigene Cluster for FYTTD1:

    Forty-two-three domain containing 1
    Hs.277533  [show with all ESTs]
    Unigene Representative Sequence: NR_027840
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000428738 ENST00000494309 ENST00000415708 ENST00000241502(uc003fyi.2 uc011buj.1)
    ENST00000412924 ENST00000418169 ENST00000426031 ENST00000424384 ENST00000463136
    ENST00000492360 ENST00000428395(uc011bui.1 uc011buk.1)

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    8/44 QIAGEN miScript miRNA Assays for microRNAs that regulate FYTTD1 (see all 44):
    hsa-miR-411* hsa-miR-21* hsa-miR-2052 hsa-miR-4307 hsa-miR-19b-2* hsa-miR-379* hsa-miR-300 hsa-miR-548k
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    Additional cDNA sequence: 

    AJ344094.1 AK027672.1 AK296283.1 AK302546.1 AK303462.1 AK315019.1 AK316308.1 AL136558.1 
    BC013602.1 BC035006.2 BC039734.1 CR533502.1 NR_027840.1 

    14 DOTS entries:

    DT.213532  DT.456152  DT.75147510  DT.99994583  DT.100788008  DT.92438559  DT.120895014  DT.95219637 
    DT.95219638  DT.95239387  DT.120894998  DT.120895005  DT.92026734  DT.92438563 

    24/330 AceView cDNA sequences (see all 330):

    BU172511 AA291448 AA988436 AW572185 CF272295 AI610694 AI337856 F11938 
    AA262528 AJ344094 BU742585 AI459115 AI804478 CB163123 F13197 AA648995 
    AI128265 AI002048 CB152034 BQ223771 BU685698 AA360473 BU517024 AA688088 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FYTTD1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    FYTTD1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    KidneyMetanephrosKidney
    Reproductive SystemMesonephrosReproductive System
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See FYTTD1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for FYTTD1

    SOURCE GeneReport for Unigene cluster: Hs.277533
        SABiosciences Custom PCR Arrays for FYTTD1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FYTTD1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for FYTTD1 gene from 4/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Fyttd11 , 5 forty-two-three domain containing 11, 5 88.22(n)1
    92.74(a)1
      16 (23.43 cM)5
    698231  NM_027226.41  NP_081502.21 
     328775005 
    chicken
    (Gallus gallus)
    Aves FYTTD11 forty-two-three domain containing 1 70.26(n)
    64.38(a)
      424921  NM_001031316.1  NP_001026487.1 
    lizard
    (Anolis carolinensis)
    Reptilia FYTTD16
    --
    65(a)
    1 ↔ 1
    GL343433.1(307389-326684)
    African clawed frog
    (Xenopus laevis)
    Amphibia BC044288.12   -- 74.33(n)    BC044288.1 


    ENSEMBL Gene Tree for FYTTD1 (if available)
    TreeFam Gene Tree for FYTTD1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for FYTTD1 gene

    FYTTD1 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for FYTTD1
    PGOHUM00000244342 PGOHUM00000236288


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/668 NCBI SNPs in FYTTD1 are shown (see all 668    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1890632221,2
    --197478600(+) TACCTA/GCCAGG 3 -- int10--------
    rs1452537941,2
    C,--197478737(+) AATTA-/AATT  
            
    AATTA
    3 -- int10--------
    rs124861121,2
    C,A,H,--197478777(+) TGGCTC/TTGTCG 3 -- int12Minor allele frequency- T:0.26NA 122
    rs1809069001,2
    --197478897(+) GCCAGC/TGCTGG 3 -- int10--------
    rs1127015231,2
    --197478938(+) GACAGG/AGTTTC 3 -- int11Minor allele frequency- A:0.50CSA 2
    rs1870082251,2
    --197478954(+) GTTGGA/CCAGGC 3 -- int10--------
    rs1908541771,2
    --197479001(+) CTTGGC/TCTCCC 3 -- int10--------
    rs602241341,2
    F,--197479110(+) GCATGG/AAATCC 3 -- int11Minor allele frequency- A:0.13WA 118
    rs1834429171,2
    --197479209(+) AGAAAC/GGTGAC 3 -- int10--------
    rs1117965401,2
    --197479254(+) ACATTG/AAATGA 3 -- int11Minor allele frequency- A:0.50CSA 2

    HapMap Linkage Disequilibrium report for FYTTD1 (197464050 - 197511317 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 4 variations for FYTTD1
         4 CNVs: 68570 4370 3473 8440

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    FYTTD1 for disorders           About GeneDecksing

    1 disease for FYTTD1:    About MalaCards
    prostatitis

    Human Genome Epidemiology (HuGE) Navigator: FYTTD1 (1 document)

    Export disorders for FYTTD1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FYTTD1 gene, integrated from 9 sources (see all 18):
    (articles sorted by number of sources associating them with FYTTD1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. UIF, a new mRNA export adaptor that works together with REF/ALY, requires FACT for recruitment to mRNA. (PubMed id 19836239)1, 2, 3 Hautbergue G.M.... Wilson S.A. (2009)
    2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2 Wiemann S.... Poustka A. (2001)
    3. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    4. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
    5. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    6. In vivo identification of sumoylation sites by a signature tag and cysteine-targeted affinity purification. (PubMed id 20388717)2 Blomster H.A.... Sistonen L. (2010)
    7. Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976)2 Daub H.... Mann M. (2008)
    8. The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (2006)
    9. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)2 Olsen J.V....Mann M. (2006)
    10. The LIFEdb database in 2006. (PubMed id 16381901)1 Mehrle A....Wiemann S. (2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 84248 HGNC: 25407 AceView: DKFZp761B1514 Ensembl:ENSG00000122068 euGenes: HUgn84248
    ECgene: FYTTD1 H-InvDB: FYTTD1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for FYTTD1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FYTTD1 gene:
    Search GeneIP for patents involving FYTTD1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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