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FUT6 Gene

protein-coding   GIFtS: 64
GCID: GC19M005830

Fucosyltransferase 6 (Alpha (1,3) Fucosyltransferase)

  See FUT6-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Fucosyltransferase 6 (Alpha (1,3) Fucosyltransferase)1 2     3)-fucosyltransferase1
Galactoside 3-L-Fucosyltransferase1 2 3     alpha-(11
Fucosyltransferase VI2 3     FT1A2
FCT3A2 3     Alpha-(1,3)-Fucosyltransferase 62
Fuc-TVI2 3     Fucosyltransferase 63
FucT-VI2 3     EC 2.4.18
EC 2.4.1.653 8     

External Ids:    HGNC: 40171   Entrez Gene: 25282   Ensembl: ENSG000001564137   OMIM: 1368365   UniProtKB: P519933   
ORGUL members:         

Export aliases for FUT6 gene to outside databases

Previous GC identifers: GC19M005922 GC19M005771 GC19M005781 GC19M005759 GC19M005590


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for FUT6 Gene:
The protein encoded by this gene is a Golgi stack membrane protein that is involved in the creation of
sialyl-Lewis X, an E-selectin ligand. Mutations in this gene are a cause of fucosyltransferase-6 deficiency. Two
transcript variants encoding the same protein have been found for this gene. (provided by RefSeq, Jul 2008)

GeneCards Summary for FUT6 Gene:
FUT6 (fucosyltransferase 6 (alpha (1,3) fucosyltransferase)) is a protein-coding gene. Diseases associated with FUT6 include fucosyltransferase 6 deficiency. GO annotations related to this gene include 3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity and fucosyltransferase activity. An important paralog of this gene is FUT5.

UniProtKB/Swiss-Prot: FUT6_HUMAN, P51993
Function: Enzyme involved in the biosynthesis of the E-Selectin ligand, sialyl-Lewis X. Catalyzes the transfer of
fucose from GDP-beta-fucose to alpha-2,3 sialylated substrates

Gene Wiki entry for FUT6 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NT_011295.12  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the FUT6 gene promoter:
         c-Fos   HOXA9   HOXA9B   AP-1   C/EBPalpha   Meis-1b   Pax-3   CP2   c-Jun   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): FUT6 promoter sequence
   Search Chromatin IP Primers for FUT6

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FUT6


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.3   Ensembl cytogenetic band:  19p13.3   HGNC cytogenetic band: 19p13.3

FUT6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FUT6 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M005830:  view genomic region     (about GC identifiers)

Start:
5,830,621 bp from pter      End:
5,839,742 bp from pter
Size:
9,122 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: FUT6_HUMAN, P51993 (See protein sequence)
Recommended Name: Alpha-(1,3)-fucosyltransferase 6  
Size: 359 amino acids; 41860 Da
Sequence caution: Sequence=AAC50191.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact;
Secondary accessions: A6NEX0 D6W637 Q9UND8
Alternative splicing: 2 isoforms:  P51993-1   P51993-2   

Explore the universe of human proteins at neXtProt for FUT6: NX_P51993

Explore proteomics data for FUT6 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn46, Asn91, Asn153, Asn184
  • 19 DME Specific Peptides for FUT6 (P51993) (see first 4)
     VPVVLGP  CFFSYLR  FIHVDDF  ADCNITA 
     FYLAFENS  ALPRCSEM  RCSEMVPG  DYITEKLW 
     QGQRWIWF  PYGWLEPW  AHLKVDVYG  DFQSPKDLA 
     FCKACWKLQ  SARVRYYQSL  VYPQADAVIVHH  ITADRKVYPQAD 
     SIPLILLWTWPFNKP  GTMMETLSRYKFYLAFENS  HPPLNLSAKTELVAWAVSNW 


    See FUT6 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_000141.1  NP_001035791.1  

    ENSEMBL proteins: 
     ENSP00000431708   ENSP00000432954   ENSP00000286955   ENSP00000466016   ENSP00000436547  
     ENSP00000432161   ENSP00000436413   ENSP00000431880   ENSP00000433811   ENSP00000313398  

    FUT6 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for FUT6

     
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    antibodies-online proteins for FUT6 (3 products) 

     
    antibodies-online peptides for FUT6

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    FUT: Fucosyltransferases

    1 InterPro protein domain:
     IPR001503 Glyco_trans_10

    Graphical View of Domain Structure for InterPro Entry P51993

    ProtoNet protein and cluster: P51993

    1 Blocks protein domain: IPB001503 Glycosyl transferase

    UniProtKB/Swiss-Prot: FUT6_HUMAN, P51993
    Similarity: Belongs to the glycosyltransferase 10 family


    Find genes that share domains with FUT6           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: FUT6_HUMAN, P51993
    Function: Enzyme involved in the biosynthesis of the E-Selectin ligand, sialyl-Lewis X. Catalyzes the transfer of
    fucose from GDP-beta-fucose to alpha-2,3 sialylated substrates
    Catalytic activity: GDP-beta-L-fucose + beta-D-galactosyl-(1->3)-N-acetyl-D-glucosaminyl-R = GDP +
    beta-D-galactosyl-(1->3)-(alpha-L-fucosyl-(1->4))-N-acetyl-beta-D-glucosaminyl-R

         Genatlas biochemistry entry for FUT6:
    fucosyltransferase,alpha-(1,3),6 (FucT-VI),plasma type,responsible for the alpha 3-fucosylation of glycoproteins
    produced in liver as suggested by the total absence of alpha 3 fucosylated-alpha 1-glycoproteins in patients with
    a FUT6 missense mutation,with a high allelic diversity,ethnic specific

         Enzyme Numbers (IUBMB): EC 2.4.1.651 2 EC 2.4.12

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008417fucosyltransferase activity TAS8175676
    GO:00170603-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity IEA--
    GO:0046920alpha-(1->3)-fucosyltransferase activity TAS11698403
         
    Find genes that share ontologies with FUT6           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for FUT6:
     Increased S DNA content 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for FUT6

    miRNA
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    miRTarBase miRNAs that target FUT6:
    hsa-mir-10b-5p (MIRT047444)

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    1 qRT-PCR Assays for microRNA that regulate FUT6:
    hsa-miR-875-3p
    SwitchGear 3'UTR luciferase reporter plasmidFUT6 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    FUT6_HUMAN, P51993: Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein.
    Note=Membrane-bound form in trans cisternae of Golgi
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    golgi apparatus5
    extracellular3
    peroxisome1

    Gene Ontology (GO): 5 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005794Golgi apparatus TAS11698403
    GO:0016020membrane ----
    GO:0016021integral component of membrane IEA--
    GO:0032580Golgi cisterna membrane IEA--
    GO:0070062extracellular vesicular exosome IDA19199708

    Find genes that share ontologies with FUT6           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for FUT6 About    
    See pathways by source

    SuperPathContained pathways About
    1Metabolism
    Metabolic pathways0.38
    2Glycosphingolipid biosynthesis - lacto and neolacto series
    Glycosphingolipid biosynthesis - lacto and neolacto series


    Find genes that share SuperPaths with FUT6           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways



    2 Kegg Pathways  (Kegg details for FUT6):
        Glycosphingolipid biosynthesis - lacto and neolacto series
    Metabolic pathways

    UniProtKB/Swiss-Prot: FUT6_HUMAN, P51993
    Pathway: Protein modification; protein glycosylation

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FUT6
    Interactions:

        Search GeneGlobe Interaction Network for FUT6

    STRING Interaction Network Preview (showing 5 interactants - click image to see 16)

    Selected Interacting proteins for FUT6 (ENSP000002869554) via UniProtKB, MINT, STRING, and/or I2D (see all 16)

    InteractantInteraction Details
    GeneCardExternal ID(s)
    B3GNT2ENSP000003055954STRING: ENSP00000305595
    B4GALT1ENSP000003690554STRING: ENSP00000369055
    B4GALT2ENSP000003492934STRING: ENSP00000349293
    B4GALT3ENSP000003209654STRING: ENSP00000320965
    FUT1ENSP000003120214STRING: ENSP00000312021
    About this table

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006486protein glycosylation TAS11698403
    GO:0036065fucosylation TAS11698403
    GO:0042355L-fucose catabolic process NAS11698403

    Find genes that share ontologies with FUT6           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for FUT6

    2 HMDB Compounds for FUT6    About this table
    CompoundSynonyms CAS #PubMed Ids
    GDP-L-fucoseGDP-beta-L-fucose (see all 5)15839-70-0--
    Guanosine diphosphate5'-GDP (see all 10)146-91-8--

    5 Novoseek inferred chemical compound relationships for FUT6 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    slex 67.2 2 7630015 (1), 12725333 (1)
    polylactosamine 66.4 1 10622713 (1)
    n-acetyllactosamine 54.8 1 10891123 (1)
    n-ethylmaleimide 34.2 1 9042366 (1)
    n-acetylglucosamine 32 1 10052591 (1)



    Find genes that share compounds with FUT6           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for FUT6 gene (2 alternative transcripts): 
    NM_000150.2  NM_001040701.1  

    Unigene Cluster for FUT6:

    Fucosyltransferase 6 (alpha (1,3) fucosyltransferase)
    Hs.631846  [show with all ESTs]
    Unigene Representative Sequence: NM_000150
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000524754(uc021unl.1) ENST00000527106 ENST00000286955 ENST00000592563
    ENST00000529165 ENST00000531085 ENST00000531199 ENST00000532464 ENST00000528505
    ENST00000526499 ENST00000591079 ENST00000318336(uc002mdf.1 uc002mdg.1 uc002mdh.1)

    miRNA
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    1 qRT-PCR Assays for microRNA that regulate FUT6:
    hsa-miR-875-3p
    SwitchGear 3'UTR luciferase reporter plasmidFUT6 3' UTR sequence
    Inhib. RNA
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    Additional mRNA sequence: 

    AF131211.1 AK098073.1 AK225795.1 AK313130.1 BC040472.1 BC061700.1 M98825.1 U27332.1 
    U27333.1 U27334.1 U27335.1 U27336.1 U27337.1 

    8 DOTS entries:

    DT.95243192  DT.86994016  DT.99952233  DT.100019203  DT.100750043  DT.75105001  DT.99978277  DT.97777317 

    22 AceView cDNA sequences:

    U27332 U27331 BC061700 U27336 M98825 AL702935 BV198591 AK098073 
    BX113350 BV198781 AF131211 AW614132 BM756773 BG432556 AI672482 AI952786 
    AU098944 BE833439 BG952128 BG402446 AW176527 BV198613 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for FUT6    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7
    SP1:              -                                                         
    SP2:              -           -     -     -                                 
    SP3:                          -     -     -                                 
    SP4:                                                                        


    ECgene alternative splicing isoforms for FUT6

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    FUT6 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ATGGCACGTG
    FUT6 Expression
    About this image

    FUT6 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    FUT6 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.631846

    UniProtKB/Swiss-Prot: FUT6_HUMAN, P51993
    Tissue specificity: Kidney, liver, colon, small intestine, bladder, uterus and salivary gland

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for FUT6 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia FUT51 fucosyltransferase 5 (alpha (1,3) fucosyltransferase) 78.08(n)
    73.33(a)
      449024  NM_001005378.1  NP_001005378.1 
    chicken
    (Gallus gallus)
    Aves FUT51 fucosyltransferase 5 (alpha (1,3) fucosyltransferase) 60.06(n)
    52.19(a)
      428341  XM_004948742.1  XP_004948799.1 
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    49(a)
    1 → many
    AAWZ02038436(4451-5581)
    African clawed frog
    (Xenopus laevis)
    Amphibia LOC3990492 alpha 1,3/4 fucosyltransferase Lewis 1 74.41(n)    AJ580005.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta FucTA1 , 3 protein amino acid glycosylation
    galactoside 3-L-fucosyltransferase3
    FucTA1
    36(a)3
    51.69(n)1
    39.68(a)1
      71B63
    396531  NM_001274943.11  NP_001261872.11 


    ENSEMBL Gene Tree for FUT6 (if available)
    TreeFam Gene Tree for FUT6 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for FUT6 gene
    FUT52  FUT42  FUT72  FUT32  FUT112  FUT102  FUT92  
    5 SIMAP similar genes for FUT6 using alignment to 7 protein entries:     FUT6_HUMAN (see all proteins):
    FUT5    FUT3    FUT9    FUT7    FUT4

    Find genes that share paralogs with FUT6           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Polymorphic Variants from UniProtKB/Swiss-Prot
    FUT6_HUMAN, P51993: Expression of alpha(1,3)-fucosyltransferase in plasma can vary among different populations. 9% of
    individuals on the isle of Java (Indonesia) do not express this enzyme. Ninety-five percent of plasma
    alpha(1,3)-fucosyltransferase-deficient individuals have Lewis negative phenotype on red cells, suggesting strong
    linkage disequilibrium between these two traits. Variations in FUT6 are responsible for plasma
    alpha(1,3)-fucosyltransferase deficiency [MIM:613852]


    Selected SNPs for FUT6 (see all 345)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs178557391,2,,4
    C,Fpathogenic16856794(-) CCTTCG/AAGAAC 4 /K /E mis1 ese34Minor allele frequency- A:0.12NA EU 5867
    rs7788091,2
    C,F,O,A,H--5590150(+) ACACCG/AGATGA 2 -- ds500135Minor allele frequency- A:0.49NS EA NA WA CSA 3408
    rs1380966471,2
    --5590167(+) CTCTCA/TCACAC 2 -- ds50010--------
    rs2000714221,2
    --5590290(+) ACACT-/CCCCCC 2 -- ds50010--------
    rs7788081,2
    C,F,A,H--5590295(-) AAAAAA/GGGGGG 2 -- ds500121Minor allele frequency- G:0.14NS EA NA WA CSA 1996
    rs3713273451,2
    C--5590295(+) CCCCC-/C/TTTTTT 2 -- ds50010--------
    rs597688851,2
    C--5590485(+) TTTTT-/T/TTT 
            
    GAGAC
    4 -- ds5001 cds11NA 2
    rs1817784131,2
    --5590505(+) TCTGTC/TGCCAG 2 -- ut310--------
    rs1859113951,2
    C--5590552(+) CCTCCA/GACTCT 2 -- ut310--------
    rs1903256681,2
    --5590568(+) TCAAGC/TGATTC 2 -- ut310--------

    HapMap Linkage Disequilibrium report for FUT6 (5830621 - 5839742 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for FUT6:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2718050CNV Deletion23290073
    dgv3694n71CNV Loss21882294
    dgv3693n71CNV Loss21882294
    nsv910901CNV Loss21882294
    nsv910903CNV Loss21882294

    Human Gene Mutation Database (HGMD): FUT6
    Locus Specific Mutation Databases (LSDB): FUT6

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing FUT6
    DNA2.0 Custom Variant and Variant Library Synthesis for FUT6

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 136836   
    OMIM disorders: 613852  
    1 disease for FUT6:    
    About MalaCards
    fucosyltransferase 6 deficiency


    Find genes that share disorders with FUT6           About GenesLikeMe

    5 Novoseek inferred disease relationships for FUT6 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    colon carcinoma 35.9 3 12670495 (2), 10747292 (1)
    cancer lung 0 1 10449611 (1)
    colorectal cancer 0 1 9690558 (1)
    carcinoma 0 2 9690558 (2)
    cancer 0 3 7693344 (1), 9538143 (1), 10449611 (1)

    Genetic Association Database (GAD): FUT6
    Human Genome Epidemiology (HuGE) Navigator: FUT6 (4 documents)

    Export disorders for FUT6 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for FUT6 gene, integrated from 10 sources (see all 73):
    (articles sorted by number of sources associating them with FUT6)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The cloning and expression of a human alpha-1,3 fucosyltransferase capable of forming the E-selectin ligand. (PubMed id 1520296)1, 2, 3, 9 Koszdin K.L. and Bowen B.R. (Biochem. Biophys. Res. Commun. 1992)
    2. Expression of human chromosome 19p alpha(1,3)-fucosyltransferase genes in normal tissues. Alternative splicing, polyadenylation, and isoforms. (PubMed id 7650030)1, 2, 9 Cameron H.S.... Weston B.W. (J. Biol. Chem. 1995)
    3. Molecular basis for plasma alpha(1,3)-fucosyltransferase gene deficiency (FUT6). (PubMed id 8175676)1, 2, 9 Mollicone R.... Oriol R. (J. Biol. Chem. 1994)
    4. Physical maps of human alpha (1,3)fucosyltransferase genes FUT3-FUT6 on chromosomes 19p13.3 and 11q21. (PubMed id 7782074)1, 3, 9 McCurley R.S....Weston B.W. (Genomics 1995)
    5. Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men. (PubMed id 22367966)1, 4 Lin X....Sun J. (Hum. Mol. Genet. 2012)
    6. Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1I+ as a master regulator of plasma protein fucosylation. (PubMed id 21203500)1, 4 Lauc G....Rudan I. (PLoS Genet. 2010)
    7. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (Diabetes Care 2010)
    8. Molecular cloning of a fourth member of a human alpha (1,3)fucosyltransferase gene family. Multiple homologous sequences that determine expression of the Lewis x, sialyl Lewis x, and difucosyl sialyl Lewis x epitopes. (PubMed id 1339443)1, 2 Weston B.W.... Lowe J.B. (J. Biol. Chem. 1992)
    9. Identification of two functionally deficient plasma alpha 3- fucosyltransferase (FUT6) alleles. (PubMed id 11102976)2, 9 Elmgren A....Larson G. (Hum. Mutat. 2000)
    10. Expression levels of FUT6 gene transfected into human colon carcinoma cells switch two sialyl-Lewis X-related carbohydrate antigens with distinct properties in cell adhesion. (PubMed id 12670495)1, 9 Kanoh A....Irimura T. (Biochem. Biophys. Res. Commun. 2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 2528 HGNC: 4017 AceView: FUT6 Ensembl:ENSG00000156413 euGenes: HUgn2528
    ECgene: FUT6 Kegg: 2528 H-InvDB: FUT6

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for FUT6 Pharmacogenomics, SNPs, Pathways
    GGDBhttp://jcggdb.jp/rcmg/ggdb/Homolog?cat=symbol&symbol=FUT6
    Functional Glycomics Gateway - GTasehttp://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=gt_hum_603

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for FUT6 gene:
    Search GeneIP for patents involving FUT6

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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