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FUOM Gene

protein-coding   GIFtS: 36
GCID: GC10M135169

Fucose Mutarotase

(Previous name: chromosome 10 open reading frame 125)
(Previous symbol: C10orf125)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Fucose Mutarotase1 2     FucM2
C10orf1251 2 3     Protein FucU Homolog2
Chromosome 10 Open Reading Frame 1251     EC 5.1.3.n23
FUCU2     

External Ids:    HGNC: 247331   Entrez Gene: 2829692   Ensembl: ENSG000001488037   UniProtKB: A2VDF03   

Export aliases for FUOM gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for FUOM Gene:
FUOM (fucose mutarotase) is a protein-coding gene. GO annotations related to this gene include racemase and epimerase activity, acting on carbohydrates and derivatives and fucose binding.

UniProtKB/Swiss-Prot: FUCM_HUMAN, A2VDF0
Function: Involved in the interconversion between alpha- and beta-L-fucoses. L-Fucose (6-deoxy-L-galactose) exists
as alpha-L-fucose (29.5%) and beta-L-fucose (70.5%), the beta-form is metabolized through the salvage pathway.
GDP-L-fucose formed either by the de novo or salvage pathways is transported into the endoplasmic reticulum,
where it serves as a substrate for N- and O-glycosylations by fucosyltransferases. Fucosylated structures
expressed on cell surfaces or secreted in biological fluids are believed to play a critical role in cell-cell
adhesion and recognition processes




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000010.10  NC_018921.2  NT_030059.14  
Regulatory elements:
   Search for regulatory transcription factor binding sites for FUOM
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for FUOM

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FUOM


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q26.3   Ensembl cytogenetic band:  10q26.3   HGNC cytogenetic band: 10q26.3

FUOM Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FUOM gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M135169:  view genomic region     (about GC identifiers)

Start:
135,168,658 bp from pter      End:
135,171,529 bp from pter
Size:
2,872 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: FUCM_HUMAN, A2VDF0 (See protein sequence)
Recommended Name: Fucose mutarotase  
Size: 154 amino acids; 16765 Da
Subunit: Mainly homodimer, but exists also as homotetramer, homooctamer, and homodecamer. The homodimeric form
seems catalytically inactive (By similarity)
Sequence caution: Sequence=CAH70284.1; Type=Erroneous gene model prediction; Sequence=CAH70285.1; Type=Erroneous
gene model prediction;
Secondary accessions: A1L300 Q5VWY2 Q5VWY3 Q6ZPD2
Alternative splicing: 2 isoforms:  A2VDF0-1   A2VDF0-2   

Explore the universe of human proteins at neXtProt for FUOM: NX_A2VDF0

Explore proteomics data for FUOM at MOPED


See FUOM Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (2 alternative transcripts): 
NP_001091953.1  NP_940874.2  

ENSEMBL proteins: 
 ENSP00000413379   ENSP00000357539   ENSP00000357540   ENSP00000278025  

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antibodies-online proteins for FUOM (3 products) 

 
antibodies-online peptides for FUOM

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antibodies-online kits for FUOM (2 products) 


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR007721 RbsD_FucU
 IPR023750 RbsD-like

Graphical View of Domain Structure for InterPro Entry A2VDF0

ProtoNet protein and cluster: A2VDF0

UniProtKB/Swiss-Prot: FUCM_HUMAN, A2VDF0
Similarity: Belongs to the RbsD / FucU family


Find genes that share domains with FUOM           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: FUCM_HUMAN, A2VDF0
Function: Involved in the interconversion between alpha- and beta-L-fucoses. L-Fucose (6-deoxy-L-galactose) exists
as alpha-L-fucose (29.5%) and beta-L-fucose (70.5%), the beta-form is metabolized through the salvage pathway.
GDP-L-fucose formed either by the de novo or salvage pathways is transported into the endoplasmic reticulum,
where it serves as a substrate for N- and O-glycosylations by fucosyltransferases. Fucosylated structures
expressed on cell surfaces or secreted in biological fluids are believed to play a critical role in cell-cell
adhesion and recognition processes
Catalytic activity: Alpha-L-fucose = beta-L-fucose

     Enzyme Number (IUBMB): EC 5.1.3.n21

     Gene Ontology (GO): 4 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016853isomerase activity ----
GO:0016857racemase and epimerase activity, acting on carbohydrates and derivatives ISS--
GO:0042806fucose binding ISS--
GO:0048029monosaccharide binding ----
     
Find genes that share ontologies with FUOM           About GenesLikeMe


Phenotypes:
     3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Fuom):
 behavior/neurological  growth/size/body  skeleton 

Find genes that share phenotypes with FUOM           About GenesLikeMe

Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for FUOM

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FUOM
Interactions:

    Search GeneGlobe Interaction Network for FUOM

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for FUOM (ENSP000003575404) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
VWA8ENSP000003686124STRING: ENSP00000368612
About this table

Gene Ontology (GO): 2 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005996monosaccharide metabolic process ----
GO:0006004fucose metabolic process ISS--

Find genes that share ontologies with FUOM           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for FUOM (FUCM)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for FUOM gene (2 alternative transcripts): 
NM_001098483.1  NM_198472.2  

Unigene Cluster for FUOM:

Fucose mutarotase
Hs.155823  [show with all ESTs]
Unigene Representative Sequence: BQ277643
6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000447176 ENST00000465384 ENST00000368551 ENST00000478895 ENST00000368552(uc001lmt.2)
ENST00000278025(uc001lms.2)
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Additional mRNA sequence: 

AK129527.1 AK310070.1 BC129818.1 BC129819.1 

5 DOTS entries:

DT.75100305  DT.101979068  DT.427390  DT.100745610  DT.100017152 

Selected AceView cDNA sequences (see all 27):

BX119427 CK299563 BU849497 AI682430 BE646025 AI333356 BQ277643 AK129527 
AI657157 AA371739 NM_198472 BM797299 CD365619 BM009909 BU597947 BQ189431 
AI269186 BI197701 BE675283 T48398 CB048432 BF206345 AA715323 AI992343 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for FUOM (see all 7)    About this scheme

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c
SP1:              -     -     -                       -                 -                     
SP2:              -     -                             -                 -     -               
SP3:                          -                       -                 -     -               
SP4:              -     -     -     -                 -                 -     -               
SP5:                                                  -                                       


ECgene alternative splicing isoforms for FUOM

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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FUOM expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
FUOM Expression
About this image


FUOM expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 3) fully expand
 
 Ovary (Reproductive System)
         Ovarian Somatic Cells Ovigerous Cord
 
 Liver (Hepatobiliary System)
 
 Kidney (Urinary System)
FUOM Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

FUOM Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.155823
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FUOM

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for FUOM gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Fuom1 , 5 RIKEN cDNA 1810014F10 gene5
fucose mutarotase1
79.61(n)1
80.92(a)1
  7 (85.11 cM)5
690641  NM_026928.31  NP_081204.21 
 1400967705 
zebrafish
(Danio rerio)
Actinopterygii sizc217g15.32 sizc217g15.3 72.78(n)   368914  BQ131137.1 


ENSEMBL Gene Tree for FUOM (if available)
TreeFam Gene Tree for FUOM (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for FUOM (see all 122)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 10 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1148653981,2
F--135168162(+) CAAGCC/GTCCCA 1 -- ds50011Minor allele frequency- G:0.03WA 118
rs1165390361,2
C,F--135168283(+) GGGAGG/ACCACC 1 -- ds50011Minor allele frequency- A:0.05WA 118
rs1138692361,2
C--135168290(+) ACCTAC/-TGCCA 1 -- ds50011Minor allele frequency- -:0.00CSA 2
rs733895451,2
C,F--135168507(+) CCTTGG/CTGTCC 2 -- ds50013Minor allele frequency- C:0.28WA CSA 121
rs591305731,2
C,F--135168520(+) AGGGCA/GCCAGG 2 -- ds50015Minor allele frequency- G:0.25WA CSA NA 243
rs602445721,2
C,F--135168596(+) GGGCCA/GCTCTG 2 -- ds50015Minor allele frequency- G:0.24WA CSA NA 243
rs1416804211,2
--135168651(+) GAGAAC/GAGAGC 2 -- ds50010--------
rs412833351,2
C,F--135168667(+) TTGGAC/ATCTTG 2 -- ds5001 ut315Minor allele frequency- A:0.19WA CSA NA 243
rs1813851631,2
--135168682(+) TGAACA/GTTTTT 2 -- ds5001 ut310--------
rs1178120951,2
C,F--135168714(+) GATACT/GCGTCC 2 -- ds5001 ut311Minor allele frequency- G:0.01NA 120

HapMap Linkage Disequilibrium report for FUOM (135168658 - 135171529 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for FUOM: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing FUOM
DNA2.0 Custom Variant and Variant Library Synthesis for FUOM

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for FUOM gene integrated from 10 sources:
(articles sorted by number of sources associating them with FUOM)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Characterization and role of fucose mutarotase in mammalian cells. (PubMed id 17602138)1, 2, 3 Park D.... Park C. (Glycobiology 2007)
  2. Crystal structures and enzyme mechanisms of a dual fucose mutarotase/ribose pyranase. (PubMed id 19524593)1 Lee K.H....Oh B.H. (J. Mol. Biol. 2009)
  3. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PubMed id 16385451)1 Grupe A....Goate A. (Am. J. Hum. Genet. 2006)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  6. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)2 Deloukas P.... Rogers J. (Nature 2004)
  7. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)1 Brandenberger R.... Stanton L.W. (Nat. Biotechnol. 2004)
  8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 282969 HGNC: 24733 AceView: C10orf125 Ensembl:ENSG00000148803 euGenes: HUgn282969
ECgene: FUOM H-InvDB: FUOM

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for FUOM Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for FUOM gene:
Search GeneIP for patents involving FUOM

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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 Search Tocris compounds for FUOM (FUCM)
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Tissue Slides
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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