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Aliases for FUBP3 Gene

Aliases for FUBP3 Gene

  • Far Upstream Element Binding Protein 3 2 3 5
  • Far Upstream Element (FUSE) Binding Protein 3 2 3
  • FUSE-Binding Protein 3 3 4
  • FBP3 3 4
  • Far Upstream Element-Binding Protein 3 3

External Ids for FUBP3 Gene

Previous HGNC Symbols for FUBP3 Gene

  • FBP3

Previous GeneCards Identifiers for FUBP3 Gene

  • GC09P124470
  • GC09P125001
  • GC09P126809
  • GC09P128746
  • GC09P128730
  • GC09U900642
  • GC09P132444
  • GC09P133454
  • GC09P102941

Summaries for FUBP3 Gene

GeneCards Summary for FUBP3 Gene

FUBP3 (Far Upstream Element Binding Protein 3) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and RNA binding. An important paralog of this gene is FUBP1.

UniProtKB/Swiss-Prot for FUBP3 Gene

  • May interact with single-stranded DNA from the far-upstream element (FUSE). May activate gene expression.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FUBP3 Gene

Genomics for FUBP3 Gene

Regulatory Elements for FUBP3 Gene

Enhancers for FUBP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G130497 1.4 ENCODE dbSUPER 10.8 -79.5 -79496 4.7 PKNOX1 FOXA2 MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 PRDM12 FUBP3 ENSG00000246851 LOC105376294 GC09M130482
GH09G130431 1.2 Ensembl ENCODE 10.2 -145.8 -145804 2.3 FOXA2 SIN3A GLI4 ZNF48 YY1 GLIS2 ZNF143 ZNF592 GLIS1 KDM1A HMCN2 FUBP3 ASS1 RN7SL665P
GH09G130480 1.1 ENCODE dbSUPER 10.4 -98.0 -97979 0.2 CBX3 RB1 ZNF76 SIN3A ZBTB40 RAD21 ELK1 THAP11 SP5 SMAD5 PRDM12 FUBP3 ABL1 LOC105376297 FIBCD1 ASS1 GC09M130482
GH09G130478 1.1 VISTA dbSUPER 10.4 -99.9 -99872 1.5 SMAD5 ZNF335 POLR2A SMARCA4 KDM5B ZNF600 ZBTB33 RBFOX2 ZBTB17 SUPT5H PRDM12 FUBP3 ABL1 LOC105376297 FIBCD1 GC09M130482 ASS1
GH09G130689 1.2 Ensembl ENCODE 9.4 +111.3 111294 1.5 PKNOX1 FOXA2 ATF1 ARID4B SIN3A YY1 FOS SP3 ZHX2 NFYC PRDM12 FUBP3 EXOSC2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FUBP3 on UCSC Golden Path with GeneCards custom track

Promoters for FUBP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000242223 643 1801 MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF143 ZNF207

Genomic Location for FUBP3 Gene

Chromosome:
9
Start:
130,578,857 bp from pter
End:
130,638,352 bp from pter
Size:
59,496 bases
Orientation:
Plus strand

Genomic View for FUBP3 Gene

Genes around FUBP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FUBP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FUBP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FUBP3 Gene

Proteins for FUBP3 Gene

  • Protein details for FUBP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96I24-FUBP3_HUMAN
    Recommended name:
    Far upstream element-binding protein 3
    Protein Accession:
    Q96I24
    Secondary Accessions:
    • A3KFK8
    • A3KFL0
    • Q92946
    • Q9BVB6

    Protein attributes for FUBP3 Gene

    Size:
    572 amino acids
    Molecular mass:
    61640 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC50893.1; Type=Frameshift; Positions=18; Evidence={ECO:0000305}; Sequence=AAH01325.1; Type=Frameshift; Positions=527; Evidence={ECO:0000305};

    Alternative splice isoforms for FUBP3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FUBP3 Gene

Post-translational modifications for FUBP3 Gene

  • Ubiquitination at Lys57, Lys87, and isoforms=378
  • Modification sites at PhosphoSitePlus

Antibody Products

  • Abcam antibodies for FUBP3
  • Santa Cruz Biotechnology (SCBT) Antibodies for FUBP3

No data available for DME Specific Peptides for FUBP3 Gene

Domains & Families for FUBP3 Gene

Protein Domains for FUBP3 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for FUBP3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FUBP3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FUBP3 Gene

Function for FUBP3 Gene

Molecular function for FUBP3 Gene

UniProtKB/Swiss-Prot Function:
May interact with single-stranded DNA from the far-upstream element (FUSE). May activate gene expression.

Gene Ontology (GO) - Molecular Function for FUBP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding IDA 8940189
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding IDA 8940189
GO:0003676 nucleic acid binding IEA --
GO:0003677 DNA binding IEA --
GO:0003723 RNA binding IDA 22658674
genes like me logo Genes that share ontologies with FUBP3: view
genes like me logo Genes that share phenotypes with FUBP3: view

Animal Model Products

CRISPR Products

miRNA for FUBP3 Gene

miRTarBase miRNAs that target FUBP3

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FUBP3 Gene

Localization for FUBP3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FUBP3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FUBP3 gene
Compartment Confidence
nucleus 5
cytosol 3
cytoskeleton 2

Gene Ontology (GO) - Cellular Components for FUBP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus NAS 8940189
GO:0005737 cytoplasm IDA 19087307
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with FUBP3: view

Pathways & Interactions for FUBP3 Gene

SuperPathways for FUBP3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FUBP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA,IDA 8940189
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006366 transcription from RNA polymerase II promoter IEA --
GO:0010628 positive regulation of gene expression IDA 19087307
GO:0045893 positive regulation of transcription, DNA-templated IDA 8940189
genes like me logo Genes that share ontologies with FUBP3: view

No data available for Pathways by source and SIGNOR curated interactions for FUBP3 Gene

Transcripts for FUBP3 Gene

mRNA/cDNA for FUBP3 Gene

(11) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FUBP3 Gene

Far upstream element (FUSE) binding protein 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FUBP3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21
SP1:
SP2: - -
SP3: - - -
SP4: - -
SP5: - -
SP6:

Relevant External Links for FUBP3 Gene

GeneLoc Exon Structure for
FUBP3
ECgene alternative splicing isoforms for
FUBP3

Expression for FUBP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FUBP3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for FUBP3 Gene

This gene is overexpressed in Breast (43.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for FUBP3 Gene



Protein tissue co-expression partners for FUBP3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FUBP3 Gene:

FUBP3

SOURCE GeneReport for Unigene cluster for FUBP3 Gene:

Hs.98751

mRNA Expression by UniProt/SwissProt for FUBP3 Gene:

Q96I24-FUBP3_HUMAN
Tissue specificity: Detected in a number of cell lines.

Evidence on tissue expression from TISSUES for FUBP3 Gene

  • Nervous system(4.4)
  • Liver(4.3)
genes like me logo Genes that share expression patterns with FUBP3: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for FUBP3 Gene

Orthologs for FUBP3 Gene

This gene was present in the common ancestor of animals.

Orthologs for FUBP3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FUBP3 35 34
  • 99.83 (n)
OneToOne
cow
(Bos Taurus)
Mammalia FUBP3 34 35
  • 90.5 (n)
oppossum
(Monodelphis domestica)
Mammalia FUBP3 35
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fubp3 34
  • 89.16 (n)
mouse
(Mus musculus)
Mammalia Fubp3 35 16 34
  • 88.83 (n)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FUBP3 35
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FUBP3 35 34
  • 83.8 (n)
OneToOne
chicken
(Gallus gallus)
Aves FUBP3 35 34
  • 84.26 (n)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fubp3 34
  • 78.41 (n)
zebrafish
(Danio rerio)
Actinopterygii fubp3 35 34
  • 71.01 (n)
OneToMany
CABZ01073334.1 35
  • 71 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Psi 34 35
  • 48.12 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_C12D8.1 34
  • 47.92 (n)
C12D8.1a 36
  • 36 (a)
C12D8.1b 36
  • 36 (a)
C36E6.1a 36
  • 34 (a)
C36E6.1b 36
  • 34 (a)
M01A10.1 36 35
  • 32 (a)
ZK418.9 36 35
  • 30 (a)
C12D8.1 35
  • 26 (a)
ManyToMany
C36E6.1 35
  • 24 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 34 (a)
ManyToMany
-- 35
  • 32 (a)
ManyToMany
-- 35
  • 21 (a)
ManyToMany
Species where no ortholog for FUBP3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FUBP3 Gene

ENSEMBL:
Gene Tree for FUBP3 (if available)
TreeFam:
Gene Tree for FUBP3 (if available)

Paralogs for FUBP3 Gene

Paralogs for FUBP3 Gene

(4) SIMAP similar genes for FUBP3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FUBP3: view

Variants for FUBP3 Gene

Sequence variations from dbSNP and Humsavar for FUBP3 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000006511 -- 130,621,920(+) AAAAA(A/G)AAAAG intron-variant
rs1000007291 -- 130,629,444(+) TAAGG(A/G)CAGCC intron-variant
rs1000022754 -- 130,634,645(+) CTGAC(C/T)GCTTT intron-variant, nc-transcript-variant, downstream-variant-500B
rs1000027999 -- 130,589,216(+) GAAAA(C/T)GTGTA intron-variant
rs1000045265 -- 130,595,664(+) CATTA(C/G)CTTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FUBP3 Gene

Variant ID Type Subtype PubMed ID
dgv7718n100 CNV gain 25217958
dgv7719n100 CNV gain 25217958
dgv7720n100 CNV gain 25217958
esv1002669 CNV gain 20482838
nsv1041989 CNV gain 25217958
nsv1054840 CNV gain 25217958
nsv825121 CNV gain 20364138
nsv825122 CNV gain 20364138
nsv831734 CNV gain 17160897
nsv831735 CNV loss 17160897

Variation tolerance for FUBP3 Gene

Residual Variation Intolerance Score: 17.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.12; 22.76% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FUBP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FUBP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FUBP3 Gene

Disorders for FUBP3 Gene

Relevant External Links for FUBP3

Genetic Association Database (GAD)
FUBP3
Human Genome Epidemiology (HuGE) Navigator
FUBP3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FUBP3

No disorders were found for FUBP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FUBP3 Gene

Publications for FUBP3 Gene

  1. The far upstream element-binding proteins comprise an ancient family of single-strand DNA-binding transactivators. (PMID: 8940189) Davis-Smyth T. … Levens D. (J. Biol. Chem. 1996) 2 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H. … Hirschhorn J.N. (Nature 2010) 3 46 64
  4. Identification of ten loci associated with height highlights new biological pathways in human growth. (PMID: 18391950) Lettre G. … Hirschhorn J.N. (Nat. Genet. 2008) 3 46 64
  5. The FUSE binding proteins FBP1 and FBP3 are potential c-myc regulators in renal, but not in prostate and bladder cancer. (PMID: 19087307) Weber A. … Kristiansen G. (BMC Cancer 2008) 3 22 64

Products for FUBP3 Gene

Sources for FUBP3 Gene

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