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Aliases for FTX Gene

Subcategory (RNA class) for FTX Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FTX Gene

  • FTX Transcript, XIST Regulator (Non-Protein Coding) 2 3
  • Mir-374a-545 Cluster Host Gene (Non-Protein Coding) 2 3
  • Five Prime To XIST 2 3
  • Non-Protein Coding RNA 182 2
  • NCRNA00182 3
  • LINC00182 3
  • MIR374AHG 3

External Ids for FTX Gene

ORGUL Members for FTX Gene

Previous Symbols for FTX Gene

  • NCRNA00182
  • MIR374AHG

Summaries for FTX Gene

GeneCards Summary for FTX Gene

FTX (FTX Transcript, XIST Regulator (Non-Protein Coding)) is an RNA Gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FTX Gene

Genomics for FTX Gene

Genomic Location for FTX Gene

Start:
73,963,955 bp from pter
End:
74,293,574 bp from pter
Size:
329,620 bases
Orientation:
Minus strand

Genomic View for FTX Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FTX Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FTX Gene

No data available for Regulatory Elements for FTX Gene

Proteins for FTX Gene

Post-translational modifications for FTX Gene

No Post-translational modifications

No data available for DME Specific Peptides for FTX Gene

Domains for FTX Gene

Gene Families for FTX Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FTX: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FTX Gene

Function for FTX Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FTX Gene

Localization for FTX Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FTX Gene

Pathways for FTX Gene

SuperPathways for FTX Gene

No Data Available

Interacting Proteins for FTX Gene

Gene Ontology (GO) - Biological Process for FTX Gene

None

No data available for Pathways by source for FTX Gene

Transcripts for FTX Gene

mRNA/cDNA for FTX Gene

(4) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FTX Gene

FTX transcript, XIST regulator (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FTX Gene

No ASD Table

Relevant External Links for FTX Gene

GeneLoc Exon Structure for
FTX
ECgene alternative splicing isoforms for
FTX

Expression for FTX Gene

mRNA expression in normal human tissues for FTX Gene

SOURCE GeneReport for Unigene cluster for FTX Gene Hs.349570

genes like me logo Genes that share expressions with FTX: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for FTX Gene

Orthologs for FTX Gene

Evolution for FTX Gene

ENSEMBL:
Gene Tree for FTX (if available)
TreeFam:
Gene Tree for FTX (if available)

No data available for Orthologs for FTX Gene

Paralogs for FTX Gene

No data available for Paralogs for FTX Gene

Variants for FTX Gene

Sequence variations from dbSNP and Humsavar for FTX Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2038 -- 74,196,534(+) AAAAA(A/G)TCCTG intron-variant
rs10786 -- 74,173,915(+) TGCGC(A/G)ATACC intron-variant
rs174133 -- 74,295,074(+) ATGCT(C/T)TTATC upstream-variant-2KB
rs174134 -- 74,294,923(+) AAAGA(A/G)AAATA upstream-variant-2KB
rs174135 -- 74,293,862(+) ACCCT(C/T)CAATT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FTX Gene

Variant ID Type Subtype PubMed ID
nsv483128 CNV Loss 15286789
esv2740225 CNV Deletion 23290073
esv2740226 CNV Deletion 23290073
esv2740227 CNV Deletion 23290073

Relevant External Links for FTX Gene

HapMap Linkage Disequilibrium report
FTX

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FTX Gene

Disorders for FTX Gene

No disorders were found for FTX Gene.

No data available for UniProtKB/Swiss-Prot for FTX Gene

Publications for FTX Gene

  1. Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. (PMID: 12045143) Chureau C. … Duret L. (Genome Res. 2002) 2 3
  2. Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region. (PMID: 21118898) Chureau C. … Rougeulle C. (Hum. Mol. Genet. 2011) 2 3
  3. [Comparative organization and the origin of noncoding regulatory RNA genes from X-chromosome inactivation center of human and mouse]. (PMID: 21254562) Kolesnikov N.N. … Elisafenko E.A. (Genetika 2010) 2 3
  4. The miR-545/374a cluster encoded in the Ftx lncRNA is overexpressed in HBV-related hepatocellular carcinoma and promotes tumorigenesis and tumor progression. (PMID: 25299640) Zhao Q. … Qin C. (PLoS ONE 2014) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FTX Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FTX
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FTX
    • Block miRNA regulation of FTX using miScript Target Protectors

    Sources for FTX Gene

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