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Aliases for FSD2 Gene

Aliases for FSD2 Gene

  • Fibronectin Type III And SPRY Domain Containing 2 2 3
  • SPRY Domain-Containing Protein 1 3 4
  • SPRY Domain Containing 1 2 3
  • SPRYD1 3 4
  • Fibronectin Type III And SPRY Domain-Containing Protein 2 3
  • MFSD2A 6

External Ids for FSD2 Gene

Previous Symbols for FSD2 Gene

  • SPRYD1

Summaries for FSD2 Gene

Entrez Gene Summary for FSD2 Gene

  • This gene encodes a protein that belongs to the FN3/SPRY family of proteins. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]

GeneCards Summary for FSD2 Gene

FSD2 (Fibronectin Type III And SPRY Domain Containing 2) is a Protein Coding gene. An important paralog of this gene is CMYA5.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FSD2 Gene

Genomics for FSD2 Gene

Genomic Location for FSD2 Gene

Start:
82,755,362 bp from pter
End:
82,806,097 bp from pter
Size:
50,736 bases
Orientation:
Minus strand

Genomic View for FSD2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FSD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FSD2 Gene

Regulatory Elements for FSD2 Gene

Proteins for FSD2 Gene

  • Protein details for FSD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1L4K1-FSD2_HUMAN
    Recommended name:
    Fibronectin type III and SPRY domain-containing protein 2
    Protein Accession:
    A1L4K1
    Secondary Accessions:
    • B3KVG1
    • B7ZM02

    Protein attributes for FSD2 Gene

    Size:
    749 amino acids
    Molecular mass:
    85385 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FSD2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FSD2 Gene

Proteomics data for FSD2 Gene at MOPED

Post-translational modifications for FSD2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FSD2 Gene

No data available for DME Specific Peptides for FSD2 Gene

Domains for FSD2 Gene

Gene Families for FSD2 Gene

HGNC:
  • FN3 :Fibronectin type III domain containing

Protein Domains for FSD2 Gene

UniProtKB/Swiss-Prot:

FSD2_HUMAN
Domain:
  • Contains 1 B30.2/SPRY domain.:
    • A1L4K1
  • Contains 2 fibronectin type-III domains.:
    • A1L4K1
genes like me logo Genes that share domains with FSD2: view

Function for FSD2 Gene

Gene Ontology (GO) - Molecular Function for FSD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FSD2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FSD2 Gene

Localization for FSD2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FSD2 Gene COMPARTMENTS Subcellular localization image for FSD2 gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Gene Ontology (GO) - Cellular Components for FSD2 Gene

Pathways for FSD2 Gene

SuperPathways for FSD2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FSD2 Gene

None

No data available for Pathways by source for FSD2 Gene

Transcripts for FSD2 Gene

Unigene Clusters for FSD2 Gene

Fibronectin type III and SPRY domain containing 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FSD2 Gene

No ASD Table

Relevant External Links for FSD2 Gene

GeneLoc Exon Structure for
FSD2
ECgene alternative splicing isoforms for
FSD2

Expression for FSD2 Gene

mRNA expression in normal human tissues for FSD2 Gene

mRNA differential expression in normal tissues according to GTEx for FSD2 Gene

This gene is overexpressed in Muscle - Skeletal (9.6), Heart - Left Ventricle (9.4), and Heart - Atrial Appendage (6.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FSD2 Gene

SOURCE GeneReport for Unigene cluster for FSD2 Gene Hs.719372

genes like me logo Genes that share expressions with FSD2: view

Orthologs for FSD2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FSD2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FSD2 36
  • 99.43 (n)
  • 99.14 (a)
FSD2 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FSD2 36
  • 87.02 (n)
  • 85.37 (a)
FSD2 37
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FSD2 36
  • 82.71 (n)
  • 80.91 (a)
FSD2 37
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fsd2 36
  • 83.38 (n)
  • 83.14 (a)
Fsd2 16
Fsd2 37
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FSD2 37
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FSD2 37
  • 66 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fsd2 36
  • 83.49 (n)
  • 84.13 (a)
chicken
(Gallus gallus)
Aves FSD2 36
  • 64.11 (n)
  • 57.16 (a)
FSD2 37
  • 51 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FSD2 37
  • 55 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fsd2 36
  • 59.02 (n)
  • 52.03 (a)
zebrafish
(Danio rerio)
Actinopterygii FSD2 37
  • 44 (a)
OneToOne
Species with no ortholog for FSD2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FSD2 Gene

ENSEMBL:
Gene Tree for FSD2 (if available)
TreeFam:
Gene Tree for FSD2 (if available)

Paralogs for FSD2 Gene

Paralogs for FSD2 Gene

Selected SIMAP similar genes for FSD2 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with FSD2: view

Variants for FSD2 Gene

Sequence variations from dbSNP and Humsavar for FSD2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs1105139 -- 82,771,263(-) gagaa(A/C)gaagc intron-variant
rs1105287 -- 82,772,260(+) GGAAC(A/C)TCTAA intron-variant
rs1105288 -- 82,772,591(+) AGAGA(C/G)AAAGA intron-variant
rs1105867 -- 82,770,331(+) cccta(C/T)ccaag intron-variant
rs1107116 -- 82,767,933(-) ACCAG(A/G)ACCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FSD2 Gene

Variant ID Type Subtype PubMed ID
esv34318 CNV Loss 17911159
esv2674021 CNV Deletion 23128226
nsv817702 CNV Loss 17921354
nsv469557 CNV Complex 16826518
nsv471687 CNV Gain 15918152

Relevant External Links for FSD2 Gene

HapMap Linkage Disequilibrium report
FSD2

Disorders for FSD2 Gene

Relevant External Links for FSD2

Genetic Association Database (GAD)
FSD2
Human Genome Epidemiology (HuGE) Navigator
FSD2
genes like me logo Genes that share disorders with FSD2: view

No data available for UniProtKB/Swiss-Prot for FSD2 Gene

Publications for FSD2 Gene

  1. Genomewide linkage and peakwide association analyses of carotid plaque in Caribbean Hispanics. (PMID: 20966410) Dong C. … Sacco R.L. (Stroke 2010) 3 49
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. (PMID: 24722188) Corominas R. … Iakoucheva L.M. (Nat. Commun. 2014) 3

Products for FSD2 Gene

Sources for FSD2 Gene

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