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Aliases for FSD1L Gene

Aliases for FSD1L Gene

  • Fibronectin Type III And SPRY Domain Containing 1-Like 2 3
  • CCDC10 3 4 6
  • FSD1NL 3 4 6
  • Cystatin And DUF19 Domain Containing 1 2 3
  • Coiled-Coil Domain Containing 10 2 3
  • CSDUFD1 3 4
  • FSD1CL 3 4
  • MIR1 3 6
  • Coiled-Coil Domain-Containing Protein 10 4
  • FSD1 N-Terminal-Like Protein 4
  • FSD1 C-Terminal Like 3
  • FSD1 N-Terminal Like 3
  • FSD1-Like Protein 3

External Ids for FSD1L Gene

Previous Symbols for FSD1L Gene

  • CSDUFD1
  • CCDC10
  • FSD1NL
  • FSD1CL

Summaries for FSD1L Gene

GeneCards Summary for FSD1L Gene

FSD1L (Fibronectin Type III And SPRY Domain Containing 1-Like) is a Protein Coding gene. An important paralog of this gene is MID1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FSD1L Gene

Genomics for FSD1L Gene

Genomic Location for FSD1L Gene

Start:
105,447,796 bp from pter
End:
105,552,433 bp from pter
Size:
104,638 bases
Orientation:
Plus strand

Genomic View for FSD1L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FSD1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FSD1L Gene

Regulatory Elements for FSD1L Gene

Proteins for FSD1L Gene

  • Protein details for FSD1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXM9-FSD1L_HUMAN
    Recommended name:
    FSD1-like protein
    Protein Accession:
    Q9BXM9
    Secondary Accessions:
    • A2A338
    • A6NKH7
    • B7Z5S6
    • B7Z5W3
    • Q5T879
    • Q5T880

    Protein attributes for FSD1L Gene

    Size:
    530 amino acids
    Molecular mass:
    59578 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FSD1L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FSD1L Gene

Proteomics data for FSD1L Gene at MOPED

Post-translational modifications for FSD1L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FSD1L Gene

Domains for FSD1L Gene

Gene Families for FSD1L Gene

HGNC:
  • FN3 :Fibronectin type III domain containing

Protein Domains for FSD1L Gene

UniProtKB/Swiss-Prot:

FSD1L_HUMAN
Domain:
  • Contains 1 B30.2/SPRY domain.:
    • Q9BXM9
  • Contains 1 COS domain.:
    • Q9BXM9
  • Contains 1 fibronectin type-III domain.:
    • Q9BXM9
genes like me logo Genes that share domains with FSD1L: view

Function for FSD1L Gene

Gene Ontology (GO) - Molecular Function for FSD1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with FSD1L: view

Phenotypes for FSD1L Gene

GenomeRNAi human phenotypes for FSD1L:
genes like me logo Genes that share phenotypes with FSD1L: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FSD1L Gene

Localization for FSD1L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FSD1L Gene COMPARTMENTS Subcellular localization image for FSD1L gene
Compartment Confidence
cytosol 3
nucleus 2
cytoskeleton 1
mitochondrion 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for FSD1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005622 intracellular --
genes like me logo Genes that share ontologies with FSD1L: view

Pathways for FSD1L Gene

SuperPathways for FSD1L Gene

No Data Available

Interacting Proteins for FSD1L Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000417492%0d%0a9606.ENSP00000430432%0d%0a
Selected Interacting proteins: ENSP00000417492 for FSD1L Gene via STRING

Symbol External ID(s) Details
HDAC2

Gene Ontology (GO) - Biological Process for FSD1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with FSD1L: view

No data available for Pathways by source for FSD1L Gene

Transcripts for FSD1L Gene

mRNA/cDNA for FSD1L Gene

(13) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FSD1L Gene

Fibronectin type III and SPRY domain containing 1-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FSD1L Gene

No ASD Table

Relevant External Links for FSD1L Gene

GeneLoc Exon Structure for
FSD1L
ECgene alternative splicing isoforms for
FSD1L

Expression for FSD1L Gene

mRNA expression in normal human tissues for FSD1L Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for FSD1L Gene

SOURCE GeneReport for Unigene cluster for FSD1L Gene Hs.136901

genes like me logo Genes that share expressions with FSD1L: view

Orthologs for FSD1L Gene

This gene was present in the common ancestor of animals.

Orthologs for FSD1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FSD1L 36
  • 99.8 (n)
  • 99.8 (a)
FSD1L 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FSD1L 36
  • 93.6 (n)
  • 96.16 (a)
FSD1L 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FSD1L 36
  • 94.15 (n)
  • 96.81 (a)
FSD1L 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fsd1l 36
  • 90.24 (n)
  • 95.56 (a)
Fsd1l 16
Fsd1l 37
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FSD1L 37
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FSD1L 37
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fsd1l 36
  • 88.42 (n)
  • 91.92 (a)
chicken
(Gallus gallus)
Aves FSD1L 36
  • 74.62 (n)
  • 73.36 (a)
FSD1L 37
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FSD1L 37
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fsd1l 36
  • 77.21 (n)
  • 81.62 (a)
zebrafish
(Danio rerio)
Actinopterygii fsd1l 36
  • 67.53 (n)
  • 73.9 (a)
fsd1l 37
  • 68 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Trim9 37
  • 13 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea trim-9 37
  • 14 (a)
OneToMany
Species with no ortholog for FSD1L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FSD1L Gene

ENSEMBL:
Gene Tree for FSD1L (if available)
TreeFam:
Gene Tree for FSD1L (if available)

Paralogs for FSD1L Gene

Selected SIMAP similar genes for FSD1L Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with FSD1L: view

Variants for FSD1L Gene

Sequence variations from dbSNP and Humsavar for FSD1L Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs16403 -- 105,552,204(-) AAGTA(-/GT)TCATT utr-variant-3-prime
rs974641 -- 105,535,335(+) TTCTC(A/G)TAGGT intron-variant
rs1327351 -- 105,535,902(+) GAAAC(A/G)AATGG intron-variant
rs1327354 -- 105,530,273(+) AGTGG(C/T)CAGGG intron-variant
rs1329021 -- 105,458,979(+) GAATT(A/T)TGATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FSD1L Gene

Variant ID Type Subtype PubMed ID
nsv893692 CNV Gain 21882294
nsv416298 CNV Loss 16902084

Relevant External Links for FSD1L Gene

HapMap Linkage Disequilibrium report
FSD1L
Human Gene Mutation Database (HGMD)
FSD1L

Disorders for FSD1L Gene

Relevant External Links for FSD1L

Genetic Association Database (GAD)
FSD1L
genes like me logo Genes that share disorders with FSD1L: view

No data available for UniProtKB/Swiss-Prot for FSD1L Gene

Publications for FSD1L Gene

  1. Characterization of human FSD1, a novel brain specific gene on chromosome 19 with paralogy to 9q31. (PMID: 11267680) Carim-Todd L. … Sumoy L. (Biochim. Biophys. Acta 2001) 2 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  3. Meta-analysis of genome-wide association data identifies two loci influencing age at menarche. (PMID: 19448620) Perry J.R. … Murabito J.M. (Nat. Genet. 2009) 3 49
  4. Cystatins--Extra- and intracellular cysteine protease inhibitors: High-level secretion and uptake of cystatin C in human neuroblastoma cells. (PMID: 20800088) Wallin H. … Abrahamson M. (Biochimie 2010) 3
  5. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3

Products for FSD1L Gene

Sources for FSD1L Gene

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