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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FSD1L Gene

protein-coding   GIFtS: 44
GCID: GC09P108210

Fibronectin Type III And SPRY Domain Containing 1-Like

(Previous names: cystatin and DUF19 domain containing 1, coiled-coil domain...)
(Previous symbols: CSDUFD1, CCDC10, FSD1NL, FSD1CL)
  Search for FSD1L
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Fibronectin Type III And SPRY Domain Containing 1-Like1 2     Coiled-Coil Domain-Containing Protein 102 3
CCDC101 2 3 5     FSD1 N-Terminal-Like Protein2 3
FSD1NL1 2 3 5     MIR12 5
CSDUFD11 2 3     FSD1 C-Terminal Like2
FSD1CL1 2 3     FSD1 N-Terminal Like2
Coiled-Coil Domain Containing 101 2     FSD1-Like Protein2
Cystatin And DUF19 Domain Containing 11 2     

External Ids:    HGNC: 137531   Entrez Gene: 838562   Ensembl: ENSG000001067017   OMIM: 6098295   UniProtKB: Q9BXM93   

Export aliases for FSD1L gene to outside databases

Previous GC identifers: GC09P105343 GC09P107250 GC09P077813


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for FSD1L Gene: 
FSD1L (fibronectin type III and SPRY domain containing 1-like) is a protein-coding gene. GO annotations related to this gene include molecular_function. An important paralog of this gene is TRIM13.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000009.11  NT_008470.19  NC_018920.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FSD1L gene promoter:
         HFH-3   FOXI1   Pax-5   FOXJ2 (long isoform)   Nkx2-5   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): FSD1L promoter sequence
   Search SABiosciences Chromatin IP Primers for FSD1L

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FSD1L


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q31   Ensembl cytogenetic band:  9q31.2   HGNC cytogenetic band: 9q31

FSD1L Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FSD1L gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P108210:  view genomic region     (about GC identifiers)

Start:
108,210,077 bp from pter      End:
108,314,714 bp from pter
Size:
104,638 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: FSD1L_HUMAN, Q9BXM9 (See protein sequence)
Recommended Name: FSD1-like protein  
Size: 530 amino acids; 59578 Da
Secondary accessions: A2A338 A6NKH7 B7Z5S6 B7Z5W3 Q5T879 Q5T880
Alternative splicing: 3 isoforms:  Q9BXM9-1   Q9BXM9-2   Q9BXM9-3   (Due to intron retention)

Explore the universe of human proteins at neXtProt for FSD1L: NX_Q9BXM9

Explore proteomics data for FSD1L at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9BXM9

  • FSD1L Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    FSD1L Protein Expression
    REFSEQ proteins (3 alternative transcripts): 
    NP_001138785.1  NP_114125.1  NP_997530.2  

    ENSEMBL proteins: 
     ENSP00000420624   ENSP00000363842   ENSP00000417492   ENSP00000419691   ENSP00000378384  
     ENSP00000363839   ENSP00000363848   ENSP00000438140  

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    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for FSD1L 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005622intracellular ----

    FSD1L for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    FN3: Fibronectin type III domain containing

    5/7 InterPro protein domains (see all 7):
     IPR001870 B30.2/SPRY
     IPR017903 COS_domain
     IPR003961 Fibronectin_type3
     IPR013783 Ig-like_fold
     IPR003879 Butyrophylin

    Graphical View of Domain Structure for InterPro Entry Q9BXM9

    ProtoNet protein and cluster: Q9BXM9

    UniProtKB/Swiss-Prot: FSD1L_HUMAN, Q9BXM9
    Similarity: Contains 1 B30.2/SPRY domain
    Similarity: Contains 1 COS domain
    Similarity: Contains 1 fibronectin type-III domain


    FSD1L for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0005515protein binding ----
         
    FSD1L for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for FSD1L:
     G0/1 arrest  Increased G1 DNA content 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for FSD1L 
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for FSD1L 
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    miRNA
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    SwitchGear 3'UTR luciferase reporter plasmidFSD1L 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FSD1L


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FSD1L

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for FSD1L (ENSP000004174924) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HDAC2ENSP000003813314STRING: ENSP00000381331
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    FSD1L for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FSD1L

    Search CenterWatch for drugs/clinical trials and news about FSD1L

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for FSD1L gene (3 alternative transcripts): 
    NM_001145313.1  NM_031919.3  NM_207647.2  

    Unigene Cluster for FSD1L:

    Fibronectin type III and SPRY domain containing 1-like
    Hs.136901  [show with all ESTs]
    Unigene Representative Sequence: CR936789
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000495708 ENST00000469022 ENST00000374710(uc011lvv.1 uc004bcq.2 uc011lvw.1)
    ENST00000481272 ENST00000484973 ENST00000394926 ENST00000480279 ENST00000374707
    ENST00000374716(uc004bcp.3) ENST00000539376
    miRNA
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    8/18 QIAGEN miScript miRNA Assays for microRNAs that regulate FSD1L (see all 18):
    hsa-miR-320a hsa-miR-607 hsa-miR-16-2* hsa-miR-200a hsa-miR-3916 hsa-miR-3125 hsa-miR-141 hsa-miR-183*
    SwitchGear 3'UTR luciferase reporter plasmidFSD1L 3' UTR sequence
    Inhib. RNA
    Products:
         
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    Sirion Biotech Customized lentivirus for stable overexpression of FSD1L 
                         Customized lentivirus expression plasmids for stable overexpression of FSD1L 
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    Additional mRNA sequence: 

    AF088031.1 AF316830.1 AK296433.1 AK299350.1 AK299491.1 AK309817.1 BC036746.1 CR936789.1 

    7 DOTS entries:

    DT.95357286  DT.422068  DT.121145670  DT.303873  DT.121145706  DT.100018051  DT.121145690 

    11 AceView cDNA sequences:

    BF061935 AF088031 AI365508 NM_031919 AF316830 BP365251 BX092318 W42487 
    AI963880 BP350166 W42534 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FSD1L expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TATTATTTGA
    FSD1L Expression
    About this image


    See FSD1L Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for FSD1L

    SOURCE GeneReport for Unigene cluster: Hs.136901
        SABiosciences Custom PCR Arrays for FSD1L
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FSD1L

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for FSD1L gene from 6/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Fsd1l1 , 5 fibronectin type III and SPRY domain containing 1-like1, 5 90.3(n)1
    95.76(a)1
      4 (28.72 cM)5
    3196361  NM_001195284.11  NP_001182213.11 
     536314715 
    chicken
    (Gallus gallus)
    Aves FSD1L1 fibronectin type III and SPRY domain containing 1-like 75.2(n)
    74.8(a)
      427302  XM_424884.3  XP_424884.2 
    lizard
    (Anolis carolinensis)
    Reptilia FSD1L6
    fibronectin type III and SPRY domain containing 1-...
    77(a)
    1 ↔ 1
    GL343218.1(1191736-1231454)
    zebrafish
    (Danio rerio)
    Actinopterygii fsd1l1 fibronectin type III and SPRY domain containing 1-like 67.82(n)
    74.59(a)
      100004668  XM_001340224.1  XP_001340260.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Trim96
    Trim9
    11(a)
    1 → many
    2L(10544881-10627374)
    worm
    (Caenorhabditis elegans)
    Secernentea trim-96
    Protein TRIM-9, isoform b
    12(a)
    1 → many
    V(1223897-1235445)


    ENSEMBL Gene Tree for FSD1L (if available)
    TreeFam Gene Tree for FSD1L (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for FSD1L gene
    TRIM132  ENSG000002487102  TRIM462  TRIM632  TRIM592  TRIM92  TRIM672  TRIM362  
    TRIM552  MID12  MID22  TRIM542  FSD12  
    2 SIMAP similar genes for FSD1L using alignment to 5 protein entries:     FSD1L_HUMAN (see all proteins):
    FSD1    SPRYD4

    FSD1L for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2030 SNPs in FSD1L are shown (see all 2030)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1927912161,2
    --108208366(+) TATGGA/GGTAAA 3 -- us2k10--------
    rs1465711801,2
    C--108208386(+) AAAAA-/AAATCACA 3 -- cds10--------
    rs748521941,2
    --108208438(+) ATGACA/CACATT 3 -- us2k10--------
    rs1462919231,2
    C--108208458(+) ATGCTC/GTTTCT 3 -- us2k10--------
    rs28123031,2
    C,F,A,H--108208482(+) ccttcC/Tctcca 3 -- us2k1 tfbs3 trp314Minor allele frequency- T:0.29NS EA NA WA CSA 788
    rs1395270211,2
    --108208523(+) CTAGAA/GTGTTC 3 -- us2k10--------
    rs1444568221,2
    --108208588(+) AGAGAC/GATCTT 3 -- us2k10--------
    rs28123041,2
    C--108208610(+) CTATGA/GAAAAT 3 -- us2k14Minor allele frequency- G:0.24NA WA EA 360
    rs792051861,2
    C--108208642(+) ATCCAG/TTTGCC 3 -- us2k10--------
    rs758458611,2
    C--108208644(+) CCATTA/TGCCTT 3 -- us2k10--------

    HapMap Linkage Disequilibrium report for FSD1L (108210077 - 108314714 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for FSD1L:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv416298CNV Loss16902084
    nsv893692CNV Gain21882294

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    FSD1L for disorders           About MalaCards
    OMIM gene information: 609829    OMIM disorders: --


    FSD1L for disorders           About GeneDecksing

    Genetic Association Database (GAD): FSD1L

    Export disorders for FSD1L gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FSD1L gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with FSD1L)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization of human FSD1, a novel brain specific gene on chromosome 19 with paralogy to 9q31. (PubMed id 11267680)1, 2, 3 Carim-Todd L.... Sumoy L. (2001)
    2. Meta-analysis of genome-wide association data identif ies two loci influencing age at menarche. (PubMed id 19448620)1, 4 Perry J.R....Murabito J.M. (2009)
    3. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, 2 Humphray S.J.... Dunham I. (2004)
    4. Protein interaction discovery using parallel analysis of translated ORFs (PLATO). (PubMed id 23503679)1 Zhu J....Elledge S.J. (2013)
    5. Functional dissection of lysine deacetylases reveals t hat HDAC1 and p300 regulate AMPK. (PubMed id 22318606)1 Lin Y.Y....Boeke J.D. (2012)
    6. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
    7. Cystatins--Extra- and intracellular cysteine protease inhibitors: High-level secretion and uptake of cystatin C in human neuroblasto ma cells. (PubMed id 20800088)1 Wallin H....Abrahamson M. (2010)
    8. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
    9. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
    10. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 83856 HGNC: 13753 AceView: CSDUFD1 Ensembl:ENSG00000106701 euGenes: HUgn83856
    ECgene: FSD1L H-InvDB: FSD1L

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for FSD1L Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FSD1L gene:
    Search GeneIP for patents involving FSD1L

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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