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Aliases for FRY-AS1 Gene

Subcategory (RNA class) for FRY-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FRY-AS1 Gene

  • FRY Antisense RNA 1 2 3 5
  • FRY Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FRY-AS1 Gene

Previous GeneCards Identifiers for FRY-AS1 Gene

  • GC13M032600
  • GC13M032604
  • GC13M032130
  • GC13M032133
  • GC13M032137
  • GC13M032138
  • GC13M032140

Summaries for FRY-AS1 Gene

GeneCards Summary for FRY-AS1 Gene

FRY-AS1 (FRY Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FRY-AS1 Gene

Genomics for FRY-AS1 Gene

Regulatory Elements for FRY-AS1 Gene

Enhancers for FRY-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G031981 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10 +49.2 49203 1.2 FOXA2 NFIB JUN ZNF644 YY1 SCRT2 FOS NFIA BHLHE40 CEBPB FRY FRY-AS1 N4BP2L1 LINC01073 ENSG00000278732
GH13G032124 1.2 FANTOM5 Ensembl ENCODE 11.2 -94.1 -94116 2.1 CEBPB RCOR1 CUX1 EP300 TCF7L2 FRY-AS1 FRY N4BP2L2 BRCA2 N4BP2L1 GC13P032060 GC13P032297
GH13G032142 1.2 Ensembl ENCODE 11.2 -111.4 -111404 1.1 FOXA2 ATF1 MLX ZFP64 ARID4B FEZF1 DMAP1 MXD4 NFYC PPARG FRY FRY-AS1 GC13P032060 GC13P032297
GH13G032080 1.1 ENCODE dbSUPER 10.8 -49.1 -49098 1.0 ELF3 FOXA2 ATF1 ARID4B THRB RARA GATA4 CREM MIXL1 THAP11 FRY FRY-AS1 GC13P032060 GC13P032297
GH13G032252 1.2 Ensembl ENCODE 9.5 -223.0 -223019 3.7 PKNOX1 FOXA2 ATF1 MLX ARID4B ZNF48 YY1 SLC30A9 FOS PAF1 FRY FRY-AS1 N4BP2L1 GC13P032297 GC13P032060
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FRY-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FRY-AS1 Gene

Chromosome:
13
Start:
32,024,046 bp from pter
End:
32,031,639 bp from pter
Size:
7,594 bases
Orientation:
Minus strand

Genomic View for FRY-AS1 Gene

Genes around FRY-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FRY-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FRY-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FRY-AS1 Gene

Proteins for FRY-AS1 Gene

Post-translational modifications for FRY-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FRY-AS1 Gene

Domains & Families for FRY-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FRY-AS1 Gene

Function for FRY-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FRY-AS1 Gene

Localization for FRY-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FRY-AS1 Gene

Pathways & Interactions for FRY-AS1 Gene

SuperPathways for FRY-AS1 Gene

No Data Available

Interacting Proteins for FRY-AS1 Gene

Gene Ontology (GO) - Biological Process for FRY-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FRY-AS1 Gene

Drugs & Compounds for FRY-AS1 Gene

No Compound Related Data Available

Transcripts for FRY-AS1 Gene

mRNA/cDNA for FRY-AS1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FRY-AS1 Gene

FRY antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FRY-AS1 Gene

No ASD Table

Relevant External Links for FRY-AS1 Gene

GeneLoc Exon Structure for
FRY-AS1
ECgene alternative splicing isoforms for
FRY-AS1

Expression for FRY-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FRY-AS1 Gene

SOURCE GeneReport for Unigene cluster for FRY-AS1 Gene:

Hs.536364
genes like me logo Genes that share expression patterns with FRY-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FRY-AS1 Gene

Orthologs for FRY-AS1 Gene

Evolution for FRY-AS1 Gene

ENSEMBL:
Gene Tree for FRY-AS1 (if available)
TreeFam:
Gene Tree for FRY-AS1 (if available)

No data available for Orthologs for FRY-AS1 Gene

Paralogs for FRY-AS1 Gene

No data available for Paralogs for FRY-AS1 Gene

Variants for FRY-AS1 Gene

Sequence variations from dbSNP and Humsavar for FRY-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000086822 -- 32,025,910(+) GGGGG(C/T)ATTCC nc-transcript-variant
rs1000148662 -- 32,028,973(+) AGGTT(C/T)TAAGA intron-variant, upstream-variant-2KB
rs1000301078 -- 32,032,730(+) GAAAG(C/T)CTTCT intron-variant, upstream-variant-2KB
rs1000431639 -- 32,032,492(+) GCTAT(A/C)GTCCA intron-variant, upstream-variant-2KB
rs1001038262 -- 32,030,933(+) GCCCC(G/T)TGAAA intron-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for FRY-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FRY-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FRY-AS1 Gene

Disorders for FRY-AS1 Gene

Relevant External Links for FRY-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FRY-AS1

No disorders were found for FRY-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FRY-AS1 Gene

Publications for FRY-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FRY-AS1 Gene

Sources for FRY-AS1 Gene

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