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Aliases for FRMPD2B Gene

Aliases for FRMPD2B Gene

  • FERM And PDZ Domain Containing 2B, Pseudogene 2 3
  • FERM And PDZ Domain Containing 2 Pseudogene 2 2 3
  • FERM And PDZ Domain Containing 2 Pseudogene 1 2 3
  • FERM And PDZ Domain Containing 2 Like 1 2 3
  • FERM And PDZ Domain Containing 2 Like 2 2 3
  • PDZ Domain Containing 5A 2 3
  • PDZ Domain Containing 5B 2 3
  • FRMPD2L1 3 4
  • FRMPD2L2 3 4
  • FRMPD2P1 3 4
  • FRMPD2P2 3 4
  • PDZD5A 3 4
  • PDZD5B 3 4
  • PDZK5A 3 4
  • PDZK5B 3 4
  • FERM And PDZ Domain-Containing Protein 2 Pseudogene 1 4
  • FERM And PDZ Domain-Containing Protein 2B Pseudogene 4
  • PDZ Domain-Containing Protein 5A 4
  • FRMPD2 Related 1 3
  • FRMPD2 Related 2 3
  • BA556L1.2 3
  • YX59F3.2 3
  • FRMPDP2 3

External Ids for FRMPD2B Gene

Previous Symbols for FRMPD2B Gene

  • PDZK5A
  • PDZD5A
  • FRMPD2L1
  • FRMPD2P2
  • PDZK5B
  • PDZD5B
  • FRMPD2L2
  • FRMPD2P1

Summaries for FRMPD2B Gene

Entrez Gene Summary for FRMPD2B Gene

  • This gene represents a pseudogene of the FERM and PDZ domain containing 2 gene (FRMPD2, GeneID 143162). Along with the functional gene, this gene is located in a region of segmental duplication on chromosome 10q. [provided by RefSeq, Dec 2014]

GeneCards Summary for FRMPD2B Gene

FRMPD2B (FERM And PDZ Domain Containing 2B, Pseudogene) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FRMPD2B Gene

Genomics for FRMPD2B Gene

Genomic Location for FRMPD2B Gene

Start:
46,876,674 bp from pter
End:
46,895,326 bp from pter
Size:
18,653 bases
Orientation:
Plus strand

Genomic View for FRMPD2B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FRMPD2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FRMPD2B Gene

No data available for Regulatory Elements for FRMPD2B Gene

Proteins for FRMPD2B Gene

  • Protein details for FRMPD2B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6IN97-FRP2L_HUMAN
    Recommended name:
    Putative protein FRMPD2-like
    Protein Accession:
    Q6IN97
    Secondary Accessions:
    • B2RPG2
    • Q5RJ30

    Protein attributes for FRMPD2B Gene

    Size:
    320 amino acids
    Molecular mass:
    35161 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FRMPD2B Gene

Proteomics data for FRMPD2B Gene at MOPED

Post-translational modifications for FRMPD2B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FRMPD2B Gene

Domains for FRMPD2B Gene

Protein Domains for FRMPD2B Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6IN97

UniProtKB/Swiss-Prot:

FRP2L_HUMAN
Domain:
  • Contains 2 PDZ (DHR) domains.:
    • Q6IN97
genes like me logo Genes that share domains with FRMPD2B: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FRMPD2B Gene

Function for FRMPD2B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FRMPD2B Gene

Localization for FRMPD2B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FRMPD2B Gene

Pathways for FRMPD2B Gene

SuperPathways for FRMPD2B Gene

No Data Available

Interacting Proteins for FRMPD2B Gene

Gene Ontology (GO) - Biological Process for FRMPD2B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070830 bicellular tight junction assembly IEA --
genes like me logo Genes that share ontologies with FRMPD2B: view

No data available for Pathways by source for FRMPD2B Gene

Transcripts for FRMPD2B Gene

mRNA/cDNA for FRMPD2B Gene

Alternative Splicing Database (ASD) splice patterns (SP) for FRMPD2B Gene

No ASD Table

Relevant External Links for FRMPD2B Gene

GeneLoc Exon Structure for
FRMPD2B
ECgene alternative splicing isoforms for
FRMPD2B

Expression for FRMPD2B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for FRMPD2B Gene

Orthologs for FRMPD2B Gene

No data available for Orthologs and Evolution for FRMPD2B Gene

Paralogs for FRMPD2B Gene

No data available for Paralogs for FRMPD2B Gene

Variants for FRMPD2B Gene

Sequence variations from dbSNP and Humsavar for FRMPD2B Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs732239 -- 46,893,784(-) GATTC(G/T)GAGCT intron-variant
rs9418907 -- 46,880,344(-) ataat(C/T)gtaca intron-variant
rs12217768 -- 46,877,529(-) AAGGA(A/T)GAATG intron-variant
rs61846369 -- 46,886,397(-) GCCTT(C/T)TGTCC intron-variant
rs75022812 -- 46,883,868(-) GAACC(A/G)ATTCC intron-variant

Relevant External Links for FRMPD2B Gene

HapMap Linkage Disequilibrium report
FRMPD2B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FRMPD2B Gene

Disorders for FRMPD2B Gene

No disorders were found for FRMPD2B Gene.

No data available for UniProtKB/Swiss-Prot for FRMPD2B Gene

Publications for FRMPD2B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for FRMPD2B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FRMPD2B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FRMPD2B
    • Block miRNA regulation of FRMPD2B using miScript Target Protectors

    Sources for FRMPD2B Gene

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