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Aliases for FRMD6-AS2 Gene

Subcategory (RNA class) for FRMD6-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FRMD6-AS2 Gene

  • FRMD6 Antisense RNA 2 2 3 5
  • FRMD6 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for FRMD6-AS2 Gene

Previous GeneCards Identifiers for FRMD6-AS2 Gene

  • GC14M051921

Summaries for FRMD6-AS2 Gene

GeneCards Summary for FRMD6-AS2 Gene

FRMD6-AS2 (FRMD6 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FRMD6-AS2 Gene

Genomics for FRMD6-AS2 Gene

Regulatory Elements for FRMD6-AS2 Gene

Enhancers for FRMD6-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G051597 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +1.3 1338 3.1 JUND NFE2L2 FRMD6 RNU6-1291P RNU6-301P ENSG00000269906 FRMD6-AS2
GH14G051602 1.1 FANTOM5 dbSUPER 0.7 -2.6 -2576 0.5 CTCF MXI1 IRF3 RBBP5 ZNF335 GLIS2 ZFHX2 ZBTB48 POLR2A PATZ1 FRMD6-AS2 ENSG00000277050
GH14G051603 1.1 ENCODE dbSUPER 0.7 -4.0 -3965 2.3 CTCF RBBP5 ZIC2 RAD21 ZNF335 GATA3 GLIS2 ZFHX2 ZBTB48 PATZ1 FRMD6-AS2 ENSG00000277050
GH14G051596 0.9 FANTOM5 ENCODE dbSUPER 0.7 +3.2 3217 0.4 SPI1 RNU6-301P FRMD6-AS2 RNU6-1291P
GH14G051615 1.4 Ensembl ENCODE dbSUPER 0.4 -16.7 -16688 2.0 FOXA2 NFIB INSM2 BRCA1 RAD21 RARA ZNF366 RCOR1 FOS DEK RNU6-301P ENSG00000201376 FRMD6-AS2 ENSG00000277050
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FRMD6-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for FRMD6-AS2 Gene

Chromosome:
14
Start:
51,454,512 bp from pter
End:
51,599,952 bp from pter
Size:
145,441 bases
Orientation:
Minus strand

Genomic View for FRMD6-AS2 Gene

Genes around FRMD6-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FRMD6-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FRMD6-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FRMD6-AS2 Gene

Proteins for FRMD6-AS2 Gene

Post-translational modifications for FRMD6-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FRMD6-AS2 Gene

Domains & Families for FRMD6-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FRMD6-AS2 Gene

Function for FRMD6-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FRMD6-AS2 Gene

Localization for FRMD6-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FRMD6-AS2 Gene

Pathways & Interactions for FRMD6-AS2 Gene

SuperPathways for FRMD6-AS2 Gene

No Data Available

Interacting Proteins for FRMD6-AS2 Gene

Gene Ontology (GO) - Biological Process for FRMD6-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FRMD6-AS2 Gene

Drugs & Compounds for FRMD6-AS2 Gene

No Compound Related Data Available

Transcripts for FRMD6-AS2 Gene

mRNA/cDNA for FRMD6-AS2 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FRMD6-AS2 Gene

FRMD6 antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FRMD6-AS2 Gene

No ASD Table

Relevant External Links for FRMD6-AS2 Gene

GeneLoc Exon Structure for
FRMD6-AS2
ECgene alternative splicing isoforms for
FRMD6-AS2

Expression for FRMD6-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FRMD6-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for FRMD6-AS2 Gene

This gene is overexpressed in Uterus (x14.7), Cervix - Ectocervix (x10.1), Fallopian Tube (x7.6), and Cervix - Endocervix (x6.5).

SOURCE GeneReport for Unigene cluster for FRMD6-AS2 Gene:

Hs.578226
genes like me logo Genes that share expression patterns with FRMD6-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FRMD6-AS2 Gene

Orthologs for FRMD6-AS2 Gene

Evolution for FRMD6-AS2 Gene

ENSEMBL:
Gene Tree for FRMD6-AS2 (if available)
TreeFam:
Gene Tree for FRMD6-AS2 (if available)

No data available for Orthologs for FRMD6-AS2 Gene

Paralogs for FRMD6-AS2 Gene

No data available for Paralogs for FRMD6-AS2 Gene

Variants for FRMD6-AS2 Gene

Sequence variations from dbSNP and Humsavar for FRMD6-AS2 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000003253 -- 51,552,236(+) CTAAC(A/G)TCTGT intron-variant
rs1000047014 -- 51,585,980(+) CAAAC(A/C)TTTGT intron-variant
rs1000091306 -- 51,537,125(+) CATTG(C/T)AGTAT intron-variant
rs1000110074 -- 51,594,188(+) GGCGC(A/G)ATCTC intron-variant
rs1000144918 -- 51,505,413(+) TAAAA(C/T)AAACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FRMD6-AS2 Gene

Variant ID Type Subtype PubMed ID
esv1010904 CNV deletion 20482838
esv2658618 CNV deletion 23128226
esv3581200 CNV loss 25503493
esv3634504 CNV loss 21293372
esv3892544 CNV gain 25118596
esv3892545 CNV loss 25118596
nsv1075864 CNV duplication 25765185
nsv1277 CNV insertion 18451855
nsv528065 CNV loss 19592680
nsv528274 CNV loss 19592680
nsv983823 CNV duplication 23825009

Relevant External Links for FRMD6-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FRMD6-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FRMD6-AS2 Gene

Disorders for FRMD6-AS2 Gene

Relevant External Links for FRMD6-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FRMD6-AS2

No disorders were found for FRMD6-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FRMD6-AS2 Gene

Publications for FRMD6-AS2 Gene

  1. Voxelwise genome-wide association study (vGWAS). (PMID: 20171287) Stein J.L. … Thompson P. (Neuroimage 2010) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for FRMD6-AS2 Gene

Sources for FRMD6-AS2 Gene

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