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Aliases for FRMD6 Gene

Aliases for FRMD6 Gene

  • FERM Domain Containing 6 2 3 5
  • Expanded Homolog 2 3
  • C14orf31 3 4
  • Willin 3 4
  • 4.1 Ezrin Radixin Moesin (FERM)-Containing Protein 3
  • Chromosome 14 Open Reading Frame 31 2
  • C14_5320 3
  • EX1 3

External Ids for FRMD6 Gene

Previous HGNC Symbols for FRMD6 Gene

  • C14orf31

Previous GeneCards Identifiers for FRMD6 Gene

  • GC14P051026
  • GC14P051955
  • GC14P032116

Summaries for FRMD6 Gene

GeneCards Summary for FRMD6 Gene

FRMD6 (FERM Domain Containing 6) is a Protein Coding gene. Among its related pathways are Hippo signaling pathway and Neuroscience. An important paralog of this gene is FRMD1.

Gene Wiki entry for FRMD6 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FRMD6 Gene

Genomics for FRMD6 Gene

Regulatory Elements for FRMD6 Gene

Enhancers for FRMD6 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around FRMD6 on UCSC Golden Path with GeneCards custom track

Promoters for FRMD6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FRMD6 on UCSC Golden Path with GeneCards custom track

Genomic Location for FRMD6 Gene

Chromosome:
14
Start:
51,489,100 bp from pter
End:
51,730,727 bp from pter
Size:
241,628 bases
Orientation:
Plus strand

Genomic View for FRMD6 Gene

Genes around FRMD6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FRMD6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FRMD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FRMD6 Gene

Proteins for FRMD6 Gene

  • Protein details for FRMD6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NE9-FRMD6_HUMAN
    Recommended name:
    FERM domain-containing protein 6
    Protein Accession:
    Q96NE9
    Secondary Accessions:
    • D3DSB9
    • Q5HYF2
    • Q8N2X1
    • Q8WUH7

    Protein attributes for FRMD6 Gene

    Size:
    622 amino acids
    Molecular mass:
    72044 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FRMD6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FRMD6 Gene

Proteomics data for FRMD6 Gene at MOPED

Post-translational modifications for FRMD6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for FRMD6 (FRMD6)
  • Abcam antibodies for FRMD6
  • Santa Cruz Biotechnology (SCBT) Antibodies for FRMD6

No data available for DME Specific Peptides for FRMD6 Gene

Domains & Families for FRMD6 Gene

Suggested Antigen Peptide Sequences for FRMD6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96NE9

UniProtKB/Swiss-Prot:

FRMD6_HUMAN :
  • Contains 1 FERM domain.
Domain:
  • Contains 1 FERM domain.
genes like me logo Genes that share domains with FRMD6: view

No data available for Gene Families for FRMD6 Gene

Function for FRMD6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FRMD6 Gene

Localization for FRMD6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FRMD6 Gene

Cytoplasm. Cell membrane; Peripheral membrane protein; Cytoplasmic side. Note=Can colocalize with actin.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FRMD6 Gene COMPARTMENTS Subcellular localization image for FRMD6 gene
Compartment Confidence
cytosol 3
mitochondrion 3
plasma membrane 3
cytoskeleton 2
nucleus 2
extracellular 1

Gene Ontology (GO) - Cellular Components for FRMD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with FRMD6: view

Pathways & Interactions for FRMD6 Gene

genes like me logo Genes that share pathways with FRMD6: view

Pathways by source for FRMD6 Gene

2 Cell Signaling Technology pathways for FRMD6 Gene
1 KEGG pathway for FRMD6 Gene

Gene Ontology (GO) - Biological Process for FRMD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032970 regulation of actin filament-based process IEA --
GO:0034613 cellular protein localization IEA --
genes like me logo Genes that share ontologies with FRMD6: view

No data available for SIGNOR curated interactions for FRMD6 Gene

Drugs & Compounds for FRMD6 Gene

No Compound Related Data Available

Transcripts for FRMD6 Gene

Unigene Clusters for FRMD6 Gene

FERM domain containing 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FRMD6 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c · 7d ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b · 10c ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b ^
SP1: - - - - - - -
SP2: - - - - - -
SP3: - - - - - - - - -
SP4: - - -
SP5: - -
SP6: - - -
SP7:
SP8:
SP9: -
SP10:
SP11: -
SP12:
SP13:
SP14: - - - - - - - -

ExUns: 15a · 15b ^ 16a · 16b ^ 17 ^ 18 ^ 19a · 19b · 19c
SP1: - - -
SP2: - - -
SP3: - - -
SP4: - - -
SP5:
SP6:
SP7: - - -
SP8: -
SP9:
SP10:
SP11: - -
SP12: -
SP13:
SP14:

Relevant External Links for FRMD6 Gene

GeneLoc Exon Structure for
FRMD6
ECgene alternative splicing isoforms for
FRMD6

Expression for FRMD6 Gene

mRNA expression in normal human tissues for FRMD6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for FRMD6 Gene

This gene is overexpressed in Breast (43.1) and Bone (21.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for FRMD6 Gene



SOURCE GeneReport for Unigene cluster for FRMD6 Gene Hs.434914

genes like me logo Genes that share expression patterns with FRMD6: view

Protein tissue co-expression partners for FRMD6 Gene

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FRMD6 Gene

Orthologs for FRMD6 Gene

This gene was present in the common ancestor of animals.

Orthologs for FRMD6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FRMD6 35
  • 92.71 (n)
  • 98.55 (a)
FRMD6 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FRMD6 35
  • 93.57 (n)
  • 98.55 (a)
FRMD6 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Frmd6 35
  • 86.23 (n)
  • 93.57 (a)
Frmd6 16
Frmd6 36
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FRMD6 35
  • 99.84 (n)
  • 100 (a)
FRMD6 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Frmd6 35
  • 85.94 (n)
  • 92.83 (a)
oppossum
(Monodelphis domestica)
Mammalia FRMD6 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FRMD6 36
  • 94 (a)
OneToOne
chicken
(Gallus gallus)
Aves FRMD6 35
  • 78.32 (n)
  • 90.13 (a)
FRMD6 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FRMD6 36
  • 69 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia frmd6 35
  • 78.42 (n)
  • 88.89 (a)
zebrafish
(Danio rerio)
Actinopterygii frmd6 35
  • 69.45 (n)
  • 72.91 (a)
wufb38g08 35
frmd6 36
  • 72 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta ex 36
  • 10 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea frm-7 36
  • 13 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 25 (a)
OneToMany
Species with no ortholog for FRMD6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FRMD6 Gene

ENSEMBL:
Gene Tree for FRMD6 (if available)
TreeFam:
Gene Tree for FRMD6 (if available)

Paralogs for FRMD6 Gene

Paralogs for FRMD6 Gene

(4) SIMAP similar genes for FRMD6 Gene using alignment to 7 proteins:

Pseudogenes.org Pseudogenes for FRMD6 Gene

genes like me logo Genes that share paralogs with FRMD6: view

Variants for FRMD6 Gene

Sequence variations from dbSNP and Humsavar for FRMD6 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs15572 -- 51,729,568(-) AAAAA(A/T)ATGGT utr-variant-3-prime
rs1465113 -- 51,616,920(-) TCACA(C/T)GTATT intron-variant
rs7140270 -- 51,656,746(+) CAGCT(A/G)TATGG intron-variant
rs7140349 -- 51,687,054(+) TATTA(A/C)ATTTG intron-variant
rs1467522 -- 51,637,851(-) GAAAA(A/C)ACTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FRMD6 Gene

Variant ID Type Subtype PubMed ID
nsv528274 CNV Loss 19592680
nsv1277 CNV Insertion 18451855
esv1010904 CNV Deletion 20482838
esv2658618 CNV Deletion 23128226
nsv528065 CNV Loss 19592680
nsv526899 CNV Loss 19592680
nsv901946 CNV Loss 21882294
esv2672342 CNV Deletion 23128226

Variation tolerance for FRMD6 Gene

Residual Variation Intolerance Score: 38% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.70; 32.45% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FRMD6 Gene

Human Gene Mutation Database (HGMD)
FRMD6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FRMD6 Gene

Disorders for FRMD6 Gene

Relevant External Links for FRMD6

Genetic Association Database (GAD)
FRMD6
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FRMD6

No disorders were found for FRMD6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FRMD6 Gene

Publications for FRMD6 Gene

  1. A novel 4.1 ezrin radixin moesin (FERM)-containing protein, 'Willin'. (PMID: 16137681) Gunn-Moore F.J. … Guild S. (FEBS Lett. 2005) 3 4 23 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A genome-wide gene-environment interaction analysis for tobacco smoke and lung cancer susceptibility. (PMID: 24658283) Zhang R. … Chen F. (Carcinogenesis 2014) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3

Products for FRMD6 Gene

Sources for FRMD6 Gene

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