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Aliases for FRMD5 Gene

Aliases for FRMD5 Gene

  • FERM Domain Containing 5 2 3

External Ids for FRMD5 Gene

Previous GeneCards Identifiers for FRMD5 Gene

  • GC15M041953
  • GC15M044162
  • GC15M020989

Summaries for FRMD5 Gene

GeneCards Summary for FRMD5 Gene

FRMD5 (FERM Domain Containing 5) is a Protein Coding gene. GO annotations related to this gene include cytoskeletal protein binding. An important paralog of this gene is FRMD3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FRMD5 Gene

Genomics for FRMD5 Gene

Regulatory Elements for FRMD5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FRMD5 Gene

Start:
43,870,761 bp from pter
End:
44,195,294 bp from pter
Size:
324,534 bases
Orientation:
Minus strand

Genomic View for FRMD5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FRMD5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FRMD5 Gene

Proteins for FRMD5 Gene

  • Protein details for FRMD5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z6J6-FRMD5_HUMAN
    Recommended name:
    FERM domain-containing protein 5
    Protein Accession:
    Q7Z6J6
    Secondary Accessions:
    • Q8NBG4

    Protein attributes for FRMD5 Gene

    Size:
    570 amino acids
    Molecular mass:
    65065 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FRMD5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FRMD5 Gene

Proteomics data for FRMD5 Gene at MOPED

Post-translational modifications for FRMD5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FRMD5 Gene

Domains for FRMD5 Gene

Suggested Antigen Peptide Sequences for FRMD5 Gene

Graphical View of Domain Structure for InterPro Entry

Q7Z6J6

UniProtKB/Swiss-Prot:

FRMD5_HUMAN :
  • Q7Z6J6
Domain:
  • Contains 1 FERM domain.
genes like me logo Genes that share domains with FRMD5: view

No data available for Gene Families for FRMD5 Gene

Function for FRMD5 Gene

Gene Ontology (GO) - Molecular Function for FRMD5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 22846708
GO:0008092 cytoskeletal protein binding IEA --
genes like me logo Genes that share ontologies with FRMD5: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FRMD5 Gene

Localization for FRMD5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FRMD5 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FRMD5 Gene COMPARTMENTS Subcellular localization image for FRMD5 gene
Compartment Confidence
cytosol 3
cytoskeleton 2
nucleus 2
extracellular 1
golgi apparatus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for FRMD5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0016021 integral component of membrane IEA --
GO:0019898 extrinsic component of membrane IEA --
genes like me logo Genes that share ontologies with FRMD5: view

Pathways for FRMD5 Gene

SuperPathways for FRMD5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FRMD5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with FRMD5: view

No data available for Pathways by source for FRMD5 Gene

Transcripts for FRMD5 Gene

Unigene Clusters for FRMD5 Gene

FERM domain containing 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FRMD5

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for FRMD5

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FRMD5 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16
SP1: -
SP2: - -
SP3: - - -
SP4: - - - - -

Relevant External Links for FRMD5 Gene

GeneLoc Exon Structure for
FRMD5
ECgene alternative splicing isoforms for
FRMD5

Expression for FRMD5 Gene

mRNA expression in normal human tissues for FRMD5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FRMD5 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (4.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FRMD5 Gene

SOURCE GeneReport for Unigene cluster for FRMD5 Gene Hs.578544

genes like me logo Genes that share expressions with FRMD5: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for FRMD5 Gene

Orthologs for FRMD5 Gene

This gene was present in the common ancestor of animals.

Orthologs for FRMD5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FRMD5 35
  • 99.88 (n)
  • 100 (a)
FRMD5 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FRMD5 35
  • 93.68 (n)
  • 98.25 (a)
FRMD5 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FRMD5 35
  • 95.09 (n)
  • 98.95 (a)
FRMD5 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Frmd5 35
  • 91.82 (n)
  • 98.38 (a)
Frmd5 16
Frmd5 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FRMD5 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FRMD5 36
  • 80 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Frmd5 35
  • 91.01 (n)
  • 97.18 (a)
chicken
(Gallus gallus)
Aves FRMD5 35
  • 83.16 (n)
  • 92.61 (a)
FRMD5 36
  • 92 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FRMD5 36
  • 87 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia frmd5 35
  • 70.86 (n)
  • 76.26 (a)
zebrafish
(Danio rerio)
Actinopterygii FRMD5 36
  • 73 (a)
OneToMany
FRMD5 (1 of 2) 36
  • 85 (a)
OneToMany
LOC570903 35
  • 77.35 (n)
  • 86.97 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG5022 36
  • 28 (a)
OneToMany
Species with no ortholog for FRMD5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FRMD5 Gene

ENSEMBL:
Gene Tree for FRMD5 (if available)
TreeFam:
Gene Tree for FRMD5 (if available)

Paralogs for FRMD5 Gene

genes like me logo Genes that share paralogs with FRMD5: view

Variants for FRMD5 Gene

Sequence variations from dbSNP and Humsavar for FRMD5 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs472385 -- 43,894,646(+) CGGAA(A/G)GAAGT intron-variant
rs472797 -- 43,922,088(+) ATACT(C/G)TCTCA intron-variant
rs475100 -- 43,904,403(+) tcgct(C/G)tgtgg intron-variant
rs475758 -- 43,881,817(+) GACTT(C/T)GGTAA intron-variant
rs481837 -- 43,925,938(+) TTATA(C/T)CAATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FRMD5 Gene

Variant ID Type Subtype PubMed ID
nsv1515 CNV Insertion 18451855
esv2676192 CNV Deletion 23128226
esv1620375 CNV Insertion 17803354
nsv832989 CNV Gain+Loss 17160897
esv2749628 CNV Deletion 23290073
nsv94497 CNV Loss 16902084
dgv2376n71 CNV Loss 21882294
nsv904176 CNV Loss 21882294

Relevant External Links for FRMD5 Gene

HapMap Linkage Disequilibrium report
FRMD5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FRMD5 Gene

Disorders for FRMD5 Gene

Relevant External Links for FRMD5

Genetic Association Database (GAD)
FRMD5
genes like me logo Genes that share disorders with FRMD5: view

No data available for UniProtKB/Swiss-Prot for FRMD5 Gene

Publications for FRMD5 Gene

  1. Biological, clinical and population relevance of 95 loci for blood lipids. (PMID: 20686565) Teslovich T.M. … Kathiresan S. (Nature 2010) 3 48
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for FRMD5 Gene

Sources for FRMD5 Gene

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